Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marchantia_20polymorpha_20subsp._20ruderalis_20[genbank_20GCA_5F0016 41455.1_202016-05-10] 4,137 sequences; 205,718,403 total letters Query= NC_020878.1 Length=44945 Score E Sequences producing significant alignments: (Bits) Value seq467 143 8e-30 seq3282 105 2e-18 seq1308 95.1 3e-15 seq3792 87.8 5e-13 >seq467 Length=265627 Score = 143 bits (158), Expect = 8e-30 Identities = 132/167 (79%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 40524 TCAGCAGAAGCTAAGTCTAGAGGAAAGTTGTGAGCGTTACGCTCGTGCATTACTTCCATA 40583 ||| ||| ||||||||||||||| ||||||||||||||||| || ||||| ||||||||| Sbjct 211098 TCAACAGCAGCTAAGTCTAGAGGGAAGTTGTGAGCGTTACGTTCATGCATAACTTCCATA 211157 Query 40584 CCTAGACTCTGTCTGTTAAGAACATCAGCCCAAGTAGGAATGACTTTACCATTAGCGTCT 40643 || || | | ||| | || |||||||||||| ||| || ||| | | ||| Sbjct 211158 CCAAGGTTAGCACGGTTGATAATATCAGCCCAAGTGTTAATTACACGACCTTGACTGTCA 211217 Query 40644 ACTACTGACTGGTTAAAGTTAAAACCATTGAGGTTAAAAGCCATAGT 40690 || || || |||||||||||||||||||| | ||| ||||||||||| Sbjct 211218 ACAACAGATTGGTTAAAGTTAAAACCATTTAAGTTGAAAGCCATAGT 211264 >seq3282 Length=366234 Score = 105 bits (116), Expect = 2e-18 Identities = 106/138 (77%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 40553 GTGAGCGTTACGCTCGTGCATTACTTCCATACCTAGACTCTGTCTGTTAAGAACATCAGC 40612 |||||||||||| || ||||| ||||||||||| || | | ||| | || |||||| Sbjct 191053 GTGAGCGTTACGTTCATGCATAACTTCCATACCAAGGTTAGCACGGTTGATAATATCAGC 190994 Query 40613 CCAAGTAGGAATGACTTTACCATTAGCGTCTACTACTGACTGGTTAAAGTTAAAACCATT 40672 |||||| ||| || ||| | | ||| || || || |||||||||||||||||||| Sbjct 190993 CCAAGTGTTAATTACACGACCTTGACTGTCAACAACAGATTGGTTAAAGTTAAAACCATT 190934 Query 40673 GAGGTTAAAAGCCATAGT 40690 | ||| ||||||||||| Sbjct 190933 TAAGTTGAAAGCCATAGT 190916 >seq1308 Length=500924 Score = 95.1 bits (104), Expect = 3e-15 Identities = 78/95 (82%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 40524 TCAGCAGAAGCTAAGTCTAGAGGAAAGTTGTGAGCGTTACGCTCGTGCATTACTTCCATA 40583 ||| ||| ||||||||||||||| ||||||||||||||||| || ||||| ||||||||| Sbjct 59657 TCAACAGCAGCTAAGTCTAGAGGGAAGTTGTGAGCGTTACGTTCATGCATAACTTCCATA 59716 Query 40584 CCTAGACTCTGTCTGTTAAGAACATCAGCCCAAGT 40618 || || | | ||| | || |||||||||||| Sbjct 59717 CCAAGGTTAGCACGGTTGATAATATCAGCCCAAGT 59751 >seq3792 Length=366655 Score = 87.8 bits (96), Expect = 5e-13 Identities = 110/151 (73%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 41004 TGGAAGACAAACATGAAGTTGAATGTTCCACTGATTCCTAAAGGCATACCATCAGAGAAA 41063 |||| ||| |||||| ||||| || ||| ||| |||||||||||||| || |||||| Sbjct 281972 TGGAGAACAGTCATGAAATTGAAAGTACCAGAGATACCTAAAGGCATACCGTCTGAGAAA 281913 Query 41064 GAACCCTGACCGAATGGATAAACTAAGAATACAGCTAGAGCTGCTGACAATGGAGCTGTG 41123 || ||||| | || || | ||||| ||||| ||| || | | |||||||| Sbjct 281912 CTTCCTTGACCAATAGGGTAGATCAAGAAAACAGCAGTAGCAGCAGCAACTGGAGCTGAA 281853 Query 41124 TATGCCACAAATATCCATGGTCTCATACCTA 41154 ||||| ||| ||||| || | |||||||| Sbjct 281852 TATGCAACAGCAATCCAAGGACGCATACCTA 281822 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143695340350158