Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marchantia_20polymorpha_20subsp._20ruderalis_20[genbank_20GCA_5F0016 41455.1_202016-05-10] 4,137 sequences; 205,718,403 total letters Query= NC_021071.1 Length=177211 Score E Sequences producing significant alignments: (Bits) Value seq467 127 2e-24 seq3792 123 3e-23 seq3761 114 1e-20 seq2371 111 2e-19 seq3282 96.9 4e-15 seq1308 91.5 2e-13 seq1921 84.2 2e-11 >seq467 Length=265627 Score = 127 bits (140), Expect = 2e-24 Identities = 131/170 (77%), Gaps = 6/170 (4%) Strand=Plus/Plus Query 67353 TCAGCAGCAGCAAGGTCAAGAGGGAAGTTGTGAGCGTTACGCTCGTGCATAACTTCCATT 67412 ||| ||||||| | ||| ||||||||||||||||||||||| || |||||||||||||| Sbjct 211098 TCAACAGCAGCTAAGTCTAGAGGGAAGTTGTGAGCGTTACGTTCATGCATAACTTCCATA 211157 Query 67413 CCAAGTCCTGCTCTGTTAAGGATGTCTGCCCAAGTAGGAATCACTTTACCACCT---GCG 67469 ||||| || | ||| | || || |||||||| ||| || || |||| | Sbjct 211158 CCAAGGTTAGCACGGTTGATAATATCAGCCCAAGTGTTAATTAC---ACGACCTTGACTG 211214 Query 67470 TCAACGACGGATTGGTTGAAGTTGAAACCGTTGAGGTTGAATGCCATAGT 67519 ||||| || |||||||| ||||| ||||| || | |||||| |||||||| Sbjct 211215 TCAACAACAGATTGGTTAAAGTTAAAACCATTTAAGTTGAAAGCCATAGT 211264 >seq3792 Length=366655 Score = 123 bits (136), Expect = 3e-23 Identities = 116/148 (78%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 67844 CATGTAGTTAAAAGTACCAGAAATACCAAGAGGCATTGCGTCAGAGAAAGAACCTTGACC 67903 |||| | || ||||||||||| ||||| | |||||| |||| |||||| |||||||| Sbjct 281961 CATGAAATTGAAAGTACCAGAGATACCTAAAGGCATACCGTCTGAGAAACTTCCTTGACC 281902 Query 67904 GAAAGGATAGACCAAGAACACAGCGAATGCTGCAGACACTGGAGCAGAGTATGCTACACA 67963 | ||| |||| |||||| ||||| || |||| |||||||| || ||||| ||| Sbjct 281901 AATAGGGTAGATCAAGAAAACAGCAGTAGCAGCAGCAACTGGAGCTGAATATGCAACAGC 281842 Query 67964 GATCCAAGGACGCATACCAAGACGGTAA 67991 ||||||||||||||||| | ||||||| Sbjct 281841 AATCCAAGGACGCATACCTAAACGGTAA 281814 >seq3761 Length=231418 Score = 114 bits (126), Expect = 1e-20 Identities = 108/138 (78%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 68051 AAGTTGGAAAGGTCCACCATTATACAACCACTCATCTAGAGTTGCTGCTTCCCAGATAGG 68110 ||||| | |||| ||||| || |||||||| ||||| | || || |||||||| ||||| Sbjct 108316 AAGTTCGTAAGGACCACCGTTGTACAACCATTCATCAACAGAAGCAGCTTCCCAAATAGG 108257 Query 68111 ATAGAAGTGAAGACCGATTGCGTTTGAACTAGGAACAACAGCACCAGAAATGATGTTGTT 68170 |||||||| | |||||| || || |||||| || |||||||||||||||||| || Sbjct 108256 GTAGAAGTGTAAACCGATAGCTGCAGAGGTAGGAATAATAGCACCAGAAATGATGTTATT 108197 Query 68171 ACCGTACATGAGCGAACC 68188 ||||| | || ||||| Sbjct 108196 TCCGTAAAGAAGAGAACC 108179 >seq2371 Length=186017 Score = 111 bits (122), Expect = 2e-19 Identities = 115/150 (77%), Gaps = 3/150 (2%) Strand=Plus/Minus Query 68116 AGTGAAGACCGATTGCGTTTGAACTAGGAACAACAGCACCAGAAATGATGTTGTTACCGT 68175 |||| | |||||| || || |||||| || |||||||||||||||||| || |||| Sbjct 41141 AGTGTAAACCGATAGCTGCAGAGGTAGGAATAATAGCACCAGAAATGATGTTATTTCCGT 41082 Query 68176 ACATGAGCGAACCTGCAACAGGTTCTCTGATACCATCGATATCAACTGGAGGTGCTGCAA 68235 | | || ||||| | |||||||| | |||||| || ||||| || ||||| ||||||| Sbjct 41081 AAAGAAGAGAACCAGATACAGGTTCACGGATACCGTCAATATCTACAGGAGGAGCTGCAA 41022 Query 68236 TGAATGCAATGATGAA---GCAAGTTGCTG 68262 | || ||||| ||||| ||||||||| Sbjct 41021 TAAAAGCAATAATGAATACTGAAGTTGCTG 40992 >seq3282 Length=366234 Score = 96.9 bits (106), Expect = 4e-15 Identities = 123/168 (73%), Gaps = 6/168 (4%) Strand=Plus/Minus Query 67382 GTGAGCGTTACGCTCGTGCATAACTTCCATTCCAAGTCCTGCTCTGTTAAGGATGTCTGC 67441 |||||||||||| || |||||||||||||| ||||| || | ||| | || || || Sbjct 191053 GTGAGCGTTACGTTCATGCATAACTTCCATACCAAGGTTAGCACGGTTGATAATATCAGC 190994 Query 67442 CCAAGTAGGAATCACTTTACCACCT---GCGTCAACGACGGATTGGTTGAAGTTGAAACC 67498 |||||| ||| || || |||| |||||| || |||||||| ||||| ||||| Sbjct 190993 CCAAGTGTTAATTAC---ACGACCTTGACTGTCAACAACAGATTGGTTAAAGTTAAAACC 190937 Query 67499 GTTGAGGTTGAATGCCATAGTTGACACACCCATTGCAGTGAACCAGAT 67546 || | |||||| |||||||| | ||| | ||||| ||||| || Sbjct 190936 ATTTAAGTTGAAAGCCATAGTGCTGATACCTAAAGCAGTAAACCAAAT 190889 >seq1308 Length=500924 Score = 91.5 bits (100), Expect = 2e-13 Identities = 77/95 (81%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 67353 TCAGCAGCAGCAAGGTCAAGAGGGAAGTTGTGAGCGTTACGCTCGTGCATAACTTCCATT 67412 ||| ||||||| | ||| ||||||||||||||||||||||| || |||||||||||||| Sbjct 59657 TCAACAGCAGCTAAGTCTAGAGGGAAGTTGTGAGCGTTACGTTCATGCATAACTTCCATA 59716 Query 67413 CCAAGTCCTGCTCTGTTAAGGATGTCTGCCCAAGT 67447 ||||| || | ||| | || || |||||||| Sbjct 59717 CCAAGGTTAGCACGGTTGATAATATCAGCCCAAGT 59751 >seq1921 Length=72791 Score = 84.2 bits (92), Expect = 2e-11 Identities = 55/61 (90%), Gaps = 0/61 (0%) Strand=Plus/Minus Query 67357 CAGCAGCAAGGTCAAGAGGGAAGTTGTGAGCGTTACGCTCGTGCATAACTTCCATTCCAA 67416 ||||||| | ||| ||||||||||||||||||||||| || |||||||||||||| |||| Sbjct 54827 CAGCAGCTAAGTCCAGAGGGAAGTTGTGAGCGTTACGTTCATGCATAACTTCCATACCAA 54768 Query 67417 G 67417 | Sbjct 54767 G 54767 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 566917881742920