Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marchantia_20polymorpha_20subsp._20ruderalis_20[genbank_20GCA_5F0016 41455.1_202016-05-10] 4,137 sequences; 205,718,403 total letters Query= NC_021072.1 Length=178807 Score E Sequences producing significant alignments: (Bits) Value seq2878 253 2e-62 seq164 140 4e-28 seq467 129 7e-25 seq3761 120 3e-22 seq3282 109 6e-19 seq3792 107 2e-18 seq2371 105 8e-18 seq2067 95.1 1e-14 seq1308 95.1 1e-14 seq1018 95.1 1e-14 seq1921 82.4 9e-11 >seq2878 Length=397857 Score = 253 bits (280), Expect = 2e-62 Identities = 368/517 (71%), Gaps = 2/517 (0%) Strand=Plus/Minus Query 66918 GTTTCTTCCTCTTGAGTAGAGTCGAATGCTTTGAAAGTGTTTGCTTGTTCACCATCTTCA 66977 ||| ||||| ||||| | || || || ||| |||||||| |||||||||||| Sbjct 140803 GTTGCTTCCCACTGAGTTGGGTTAAAAGCACGGAATGTGTTTGCACCATCACCATCTTCA 140744 Query 66978 TACAGAGTATTCTCTACTGTAACACCATGAATGGCAGAAAGCAATGCACCACCCAGGATA 67037 | | ||||||||| || ||| |||| ||||| || | | | ||| |||| | | Sbjct 140743 AATAAAGTATTCTCAACAGTAGCACCGTGAATTGCGCATAAAAGAGCAGCACCTAAAACT 140684 Query 67038 CCTGCTACACCCATCATATGAAACGGGTTCAAGGTCCAGTTATGGAATCCTTGTAGGAAG 67097 || || |||||||||||||| || ||||| || ||||||||||| || ||||| | || Sbjct 140683 CCAGCGACACCCATCATATGGAATGGGTTTAAAGTCCAGTTATGAAAGCCTTGAAAAAAA 140624 Query 67098 AGAAGGAATCGAAAGATTGCTGAGACCCCGAAAGATGGAGCGAAAAACCAACTCGATTGA 67157 |||| |||| ||| ||||| | || || ||| || || |||||||||| ||||| Sbjct 140623 AGAATAAATCTAAAAATTGCAGCTACACCAAAACTAGGTGCAAAAAACCAACCTGATTGT 140564 Query 67158 CCCAGAGGGTAGATGAGAAAGACACTAACAAAAACAGCGATAGGACCAGAGAACGCAATA 67217 || | ||| || || ||||| ||| ||||||||||| ||||| ||||| |||||||| Sbjct 140563 CCTAAAGGATAAATAAGAAAAACAGATACAAAAACAGCAATAGGTCCAGAAAACGCAATT 140504 Query 67218 GCATTGTAGGGACGGATACCGATGAGA-CGTGCCAGTTCAAACTGGCGAAGCATGAAACC 67276 ||||| || ||||| | | || ||| | || |||||||| || || | ||| || || Sbjct 140503 GCATTATAAGGACGTA-ATTGAACAGATCTAGCAAGTTCAAATTGTCGTAACATAAAGCC 140445 Query 67277 AATTAGAGCGAAAGCCCCGTGGAGCGCCACAAAATTCCAGAGTCCTCCAAGTTGGATCCA 67336 |||| || || || || || || || |||||| |||| | || || | |||| ||| Sbjct 140444 TATTAAGGCAAATGCACCATGAAGAGCTACAAAAGTCCATAAACCACCTAATTGGCACCA 140385 Query 67337 GCGGACGAAATCCCCCTGAGACTCAGGACCCCAAAGTAGAAGAAGAGAATGACCCATAGC 67396 || ||||| || || | ||||| ||||| | || || | ||||||| | | | Sbjct 140384 ACGAGTAAAATCACCTTGTGCTTCAGGTCCCCATAATAATAGTAAAGAATGAGCTAAACT 140325 Query 67397 ATCAGCAGGCGTTGACACAGCCGCTGTGAGAAAATTA 67433 || || || || || ||||| || || | ||||||| Sbjct 140324 ATTTGCTGGAGTAGAAACAGCGGCAGTTAAAAAATTA 140288 >seq164 Length=700310 Score = 140 bits (154), Expect = 4e-28 Identities = 133/170 (78%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 66597 TTACCACGGGGCAGAACTTCTTCTGGGAATACAAAGTTTTCATGCGGTTGATCGATAGGT 66656 || ||||| |||||||| || ||||||||||||| |||||||| || ||||| || | Sbjct 564032 TTTCCACGTGGCAGAACCTCCTCTGGGAATACAAGATTTTCATGAGGCTGATCTTGAGCT 563973 Query 66657 GCCAACCATGCACGAAGACCTTCATTCAATAGAATGTTCTTTGTGTAGAACGTCTCGAAC 66716 |||| ||| || | || ||||||||| |||| ||| || ||||| || || || || || Sbjct 563972 GCCATCCAAGCTCTAATACCTTCATTTAATAAAATATTTTTTGTATAAAAAGTTTCAAAT 563913 Query 66717 TCTGGGTCTTCTGCTGCTCTGATCTCTTGGGATACAAAGTCATAAGCACG 66766 ||||| || |||||||| | || |||||||| ||||| || || ||||| Sbjct 563912 TCTGGATCCTCTGCTGCACGAATTTCTTGGGAAACAAAATCGTAGGCACG 563863 >seq467 Length=265627 Score = 129 bits (142), Expect = 7e-25 Identities = 134/176 (76%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 67834 TCAGCAGCAGCAAGGTCGAGAGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATA 67893 ||| ||||||| | ||| |||||||||||||| |||||||| |||||||||||||||||| Sbjct 211098 TCAACAGCAGCTAAGTCTAGAGGGAAGTTGTGAGCGTTACGTTCATGCATAACTTCCATA 211157 Query 67894 CCCAAACCAGCGCGGTTGAGAACGTCTGCCCAGGTAGGCAGAACCTTACCAGAACTATCA 67953 || | ||| ||||||| || || ||||| || | || ||| ||| ||| Sbjct 211158 CCAAGGTTAGCACGGTTGATAATATCAGCCCAAGTGTTAATTACACGACCTTGACTGTCA 211217 Query 67954 AGGATAGACTGGTTGAAGTTGAAACCATTCAGGTTGAATGCCATGGTGCTAACACC 68009 | | ||| ||||| ||||| |||||||| | |||||| ||||| ||||| | ||| Sbjct 211218 ACAACAGATTGGTTAAAGTTAAAACCATTTAAGTTGAAAGCCATAGTGCTGATACC 211273 >seq3761 Length=231418 Score = 120 bits (132), Expect = 3e-22 Identities = 110/139 (79%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 68533 AGTTGGAAAGGACCACCATTGTACAACCACTCATCAAGGGTTGCTGCTTCCCAAATGGGA 68592 |||| | |||||||||| ||||||||||| ||||||| | || ||||||||||| || Sbjct 108315 AGTTCGTAAGGACCACCGTTGTACAACCATTCATCAACAGAAGCAGCTTCCCAAATAGGG 108256 Query 68593 TAAAAGTGAAGACCAATTGCATTTGAACTAGGAACAACAGCACCAGAAATGATGTTGTTA 68652 || ||||| | ||| || || || |||||| || |||||||||||||||||| || Sbjct 108255 TAGAAGTGTAAACCGATAGCTGCAGAGGTAGGAATAATAGCACCAGAAATGATGTTATTT 108196 Query 68653 CCATACAGAAGTGAACCAG 68671 || || ||||| ||||||| Sbjct 108195 CCGTAAAGAAGAGAACCAG 108177 >seq3282 Length=366234 Score = 109 bits (120), Expect = 6e-19 Identities = 125/168 (74%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 67863 GTGTGCGTTACGCTCATGCATAACTTCCATACCCAAACCAGCGCGGTTGAGAACGTCTGC 67922 ||| |||||||| |||||||||||||||||||| | ||| ||||||| || || || Sbjct 191053 GTGAGCGTTACGTTCATGCATAACTTCCATACCAAGGTTAGCACGGTTGATAATATCAGC 190994 Query 67923 CCAGGTAGGCAGAACCTTACCAGAACTATCAAGGATAGACTGGTTGAAGTTGAAACCATT 67982 ||| || | || ||| ||| |||| | ||| ||||| ||||| |||||||| Sbjct 190993 CCAAGTGTTAATTACACGACCTTGACTGTCAACAACAGATTGGTTAAAGTTAAAACCATT 190934 Query 67983 CAGGTTGAATGCCATGGTGCTAACACCAAGTGCAGTGAACCAGATACC 68030 | |||||| ||||| ||||| | ||| | ||||| ||||| ||||| Sbjct 190933 TAAGTTGAAAGCCATAGTGCTGATACCTAAAGCAGTAAACCAAATACC 190886 >seq3792 Length=366655 Score = 107 bits (118), Expect = 2e-18 Identities = 112/147 (76%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 68325 CATGTAGTTGAAAGTACCAGAAATGCCGAGAGGCATTGCGTCAGAGAACGAACCTTGACC 68384 |||| | |||||||||||||| || || | |||||| |||| ||||| |||||||| Sbjct 281961 CATGAAATTGAAAGTACCAGAGATACCTAAAGGCATACCGTCTGAGAAACTTCCTTGACC 281902 Query 68385 GAAAGGATAGACCAGGAAGACTGCGGATGCTGCTGCAACAGGTGCAGAGTATGCAACACA 68444 | ||| |||| || ||| || || | || || ||||| || || || ||||||||| Sbjct 281901 AATAGGGTAGATCAAGAAAACAGCAGTAGCAGCAGCAACTGGAGCTGAATATGCAACAGC 281842 Query 68445 GATCCAAGGACGCATACCAAGACGATA 68471 ||||||||||||||||| | ||| || Sbjct 281841 AATCCAAGGACGCATACCTAAACGGTA 281815 >seq2371 Length=186017 Score = 105 bits (116), Expect = 8e-18 Identities = 101/127 (80%), Gaps = 2/127 (2%) Strand=Plus/Minus Query 68621 TAGGAACAACAGCACCAGAAATGATGTTGTTACCATACAGAAGTGAACCAGCAACAGGTT 68680 |||||| || |||||||||||||||||| || || || ||||| ||||||| ||||||| Sbjct 41117 TAGGAATAATAGCACCAGAAATGATGTTATTTCCGTAAAGAAGAGAACCAGATACAGGTT 41058 Query 68681 CACGAATACCATCGATGTCCACAGGGGGAGCAGCGATGAAGGCGACGATGAA-ACAGATG 68739 |||| ||||| || || || ||||| ||||| || || || || | ||||| || || Sbjct 41057 CACGGATACCGTCAATATCTACAGGAGGAGCTGCAATAAAAGCAATAATGAATACTGA-A 40999 Query 68740 GTTGCTG 68746 ||||||| Sbjct 40998 GTTGCTG 40992 >seq2067 Length=7856 Score = 95.1 bits (104), Expect = 1e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 35511 CTCCCCAGGTAGGATTTGAACCTACGACCAATCGATTAACAGTCGATAGCTCTGCCGCTG 35570 |||| ||||||||||||||||||||||||||||| ||||||| ||| ||||| || ||| Sbjct 3883 CTCCTCAGGTAGGATTTGAACCTACGACCAATCGGTTAACAGCCGACCGCTCTACCACTG 3942 Query 35571 AGCTACTGAGGA 35582 ||||||| |||| Sbjct 3943 AGCTACTAAGGA 3954 >seq1308 Length=500924 Score = 95.1 bits (104), Expect = 1e-14 Identities = 78/95 (82%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 67834 TCAGCAGCAGCAAGGTCGAGAGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATA 67893 ||| ||||||| | ||| |||||||||||||| |||||||| |||||||||||||||||| Sbjct 59657 TCAACAGCAGCTAAGTCTAGAGGGAAGTTGTGAGCGTTACGTTCATGCATAACTTCCATA 59716 Query 67894 CCCAAACCAGCGCGGTTGAGAACGTCTGCCCAGGT 67928 || | ||| ||||||| || || ||||| || Sbjct 59717 CCAAGGTTAGCACGGTTGATAATATCAGCCCAAGT 59751 >seq1018 Length=294332 Score = 95.1 bits (104), Expect = 1e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 35511 CTCCCCAGGTAGGATTTGAACCTACGACCAATCGATTAACAGTCGATAGCTCTGCCGCTG 35570 |||| ||||||||||||||||||||||||||||| ||||||| ||| ||||| || ||| Sbjct 216763 CTCCTCAGGTAGGATTTGAACCTACGACCAATCGGTTAACAGCCGACCGCTCTACCACTG 216822 Query 35571 AGCTACTGAGGA 35582 ||||||| |||| Sbjct 216823 AGCTACTAAGGA 216834 >seq1921 Length=72791 Score = 82.4 bits (90), Expect = 9e-11 Identities = 53/58 (91%), Gaps = 0/58 (0%) Strand=Plus/Minus Query 67838 CAGCAGCAAGGTCGAGAGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATACC 67895 ||||||| | ||| |||||||||||||| |||||||| |||||||||||||||||||| Sbjct 54827 CAGCAGCTAAGTCCAGAGGGAAGTTGTGAGCGTTACGTTCATGCATAACTTCCATACC 54770 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 572024817636840