Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marchantia_20polymorpha_20subsp._20ruderalis_20[genbank_20GCA_5F0016 41455.1_202016-05-10] 4,137 sequences; 205,718,403 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq4073 118 2e-21 seq3072 114 3e-20 seq2625 109 1e-18 seq487 100 6e-16 >seq4073 Length=488838 Score = 118 bits (130), Expect = 2e-21 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 ||||| ||||| ||||| | || | ||| | |||| |||||| |||||||| || Sbjct 173226 ATACCTCCTCTGAGACGGAGCACAAGATGCAGGGTAGACTCTTTCTGTATATTATAGTCT 173285 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | | ||||| |||| || | || ||||| || ||||| || ||||| |||||||| Sbjct 173286 GCCAGAGTTCGCCCATCTTCGAGCTGCTTACCGGCGAAGATCAACCTCTGCTGATCAGGA 173345 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || ||||||||||| || || ||||| || || || || | || || ||| Sbjct 173346 GGGATTCCTTCTTTGTCCTGGATTTTCGCCTTGACGTTGTCGATCGTGTCGGAGCTTTCC 173405 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || |||| ||||||||| || ||||| || || || | ||| |||||||| Sbjct 173406 ACCTCTAAAGTAATGGTCTTGCCAGTCAAGGTCTTGACAAAAATCTGCAT 173455 Score = 86.0 bits (94), Expect = 1e-11 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || || ||||||||||| | || | ||| | || | |||||| || |||||||| Sbjct 172770 ATTCCTCCTCTAAGACGGAGGACAAGATGCAGGGTGGACTCTTTCTGAATGTTATAATCT 172829 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | | ||||| |||| || | ||| ||||| || ||||| || ||||| ||||| || Sbjct 172830 GCAAGAGTTCGCCCATCTTCGAGTTGCTTACCGGCGAAGATCAACCTCTGCTGATCGGGA 172889 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||| || || || || || ||| || || || | || || || Sbjct 172890 GGAATACCTTCCTTGTCCTGAATCTTCGCTTTGACGTTGTCGATGGTGTCCGAGCTCTCG 172949 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || ||||| ||||| || || || | |||||| | || || ||||| Sbjct 172950 ACCTCCAGAGTGATGGTCTTGCCGGTCAGTGTTTTCACGAAGATTTGCAT 172999 >seq3072 Length=975934 Score = 114 bits (126), Expect = 3e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 192310 CCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGAT 192369 ||||| | |||||| | || || || ||||| | || || |||||||||||| | | Sbjct 272037 CCACCACGAAGACGGAGCACCAAGTGCAAAGTGGATTCCTTTTGGATATTATAATCCGCT 271978 Query 192370 AATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGT 192429 | ||| | |||| || | ||| || || ||||| || || ||||| || || || || Sbjct 271977 AGAATTCTTCCATCCTCGAGTTGCTTTCCTGCAAAAATCAACCTCTGCTGGTCTGGGGGG 271918 Query 192430 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACT 192489 ||||| || || ||||| || || | || || || |||| |||||| || || Sbjct 271917 ATTCCCTCCTTGTCTTGAATCTTCGTCTTCACGTTGTCGATAGTATCTGAGCTCTCAACC 271858 Query 192490 TCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537 || ||||||||||| |||||||| || || || | || ||||||||| Sbjct 271857 TCAAGAGTAATGGTCTTACCAGTCAAGGTCTTCACGAAAATCTGCATT 271810 Score = 84.2 bits (92), Expect = 4e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 192345 CTCTTTAGAGATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAA 192404 |||||| ||| || || || | || || || | || ||||| || ||||||||||| Sbjct 271094 CTCTTTTTGGATGTTGTAGTCGGCTAGCGTGCGGCCGTCCTCCAACTGCTTACCAGCAAA 271035 Query 192405 GATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACAT 192463 || |||| ||| ||||| ||||| ||||| || || ||||||||||| |||| |||| Sbjct 271034 AATCAATCGCTGCTGATCTGGTGGAATTCCCTCCTTGTCTTGTATTTTGGTTTTCACAT 270976 >seq2625 Length=346021 Score = 109 bits (120), Expect = 1e-18 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 192310 CCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGAT 192369 ||||| | |||||| | || || || ||||||| || || |||||||||||| | | Sbjct 282245 CCACCACGAAGACGGAGCACCAAGTGCAAAGTAGATTCCTTTTGGATATTATAATCCGCT 282186 Query 192370 AATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGT 192429 | ||| | |||| || | ||| || || || || || || ||||| || || || || Sbjct 282185 AGAATTCTTCCATCCTCGAGTTGCTTTCCTGCGAAAATCAACCTCTGCTGGTCTGGGGGG 282126 Query 192430 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACT 192489 ||||| || || ||||| || || | || || || |||| |||||| || || Sbjct 282125 ATTCCCTCCTTGTCTTGAATCTTCGTCTTCACGTTGTCGATAGTATCTGAGCTCTCAACC 282066 Query 192490 TCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537 || ||||||||||| ||||| || || || || | || ||||||||| Sbjct 282065 TCAAGAGTAATGGTCTTACCTGTCAAGGTCTTCACGAAAATCTGCATT 282018 Score = 100 bits (110), Expect = 6e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 ||||| || || | | || || | ||| | ||||| ||| || ||||||||||| Sbjct 281108 ATACCTCCCCTCAATCTCAAGACGAGATGGAGAGTAGACTCCTTCTGTATATTATAATCG 281049 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | | ||||| | || ||||| || ||||| |||||||| ||||||||||| || || Sbjct 281048 GCCAGCGTTCGGCCGTCCTCCAACTGCTTACCTGCAAAGATCAATCTCTGTTGGTCTGGA 280989 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || || || |||||||| || || |||| || || || | || || ||| Sbjct 280988 GGAATACCCTCCTTATCTTGGATCTTGGTTTTGACGTTGTCGATGGTGTCGGAGCTTTCG 280929 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || | || ||||| || || || | || || | |||||||||||| Sbjct 280928 ACCTCCAAGGTGATGGTCTTTCCTGTAAGCGTCTTCACAAATATCTGCAT 280879 >seq487 Length=466406 Score = 100 bits (110), Expect = 6e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 ||||| || || ||||| | || ||||| | ||| | ||| || ||| ||||| || Sbjct 177265 ATACCTCCCCTGAGACGAAGCACCAAATGGAGAGTGGACTCCTTTTGGATGTTATAGTCC 177206 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | | ||||| |||| || | || || || || ||||| | |||||| || || || Sbjct 177205 GCGAGAGTTCGGCCATCTTCGAGCTGCTTGCCGGCGAAGATCAGTCTCTGCTGGTCTGGG 177146 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || ||||||||||| ||||| || ||| || |||||| || | || || ||| Sbjct 177145 GGAATTCCTTCTTTGTCTTGAATCTTAGCCTTGACATTATCGATGGTGTCGGAGCTTTCC 177086 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || |||||||| || ||||| || | || || | || |||||||| Sbjct 177085 ACCTCCAGAGTAATTGTCTTACCCGTGAGGGTCTTCACGAAGATCTGCAT 177036 Score = 95.1 bits (104), Expect = 2e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 ||||| || || | || | || ||||| | ||| | ||| || ||| || || || Sbjct 176809 ATACCTCCCCTCAACCGAAGCACCAAATGAAGAGTGGACTCCTTTTGGATGTTGTAGTCT 176750 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | | ||||| | || || | || ||||| |||||||| | ||||| || || || Sbjct 176749 GCAAGAGTTCGGCCGTCCTCGAGCTGCTTACCGGCAAAGATCAGCCTCTGCTGGTCTGGA 176690 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || ||||| || || || || ||||| ||| || ||| || | ||| || |||| Sbjct 176689 GGAATTCCCTCCTTGTCCTGAATTTTGGCTTTGACGTTATCAATGGTATCGGAGCTTTCT 176630 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||||| ||| || || ||||| || | |||||| | ||| |||||||| Sbjct 176629 ACTTCTAAAGTGATAGTCTTACCGGTGAGTGTTTTCACAAAAATCTGCAT 176580 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984427817329950