Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marchantia_20polymorpha_20subsp._20ruderalis_20[genbank_20GCA_5F0016 41455.1_202016-05-10] 4,137 sequences; 205,718,403 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq3072 118 2e-21 seq2625 114 2e-20 seq4073 104 4e-17 seq487 100 5e-16 seq4017 86.0 1e-11 >seq3072 Length=975934 Score = 118 bits (130), Expect = 2e-21 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 171843 CCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGAT 171902 ||||| | ||| || | || || || ||||| | || || ||||||||||| | | Sbjct 272037 CCACCACGAAGACGGAGCACCAAGTGCAAAGTGGATTCCTTTTGGATATTATAATCCGCT 271978 Query 171903 AAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGT 171962 | | || | | || || | ||| || || |||||||| || ||||| ||||| || || Sbjct 271977 AGAATTCTTCCATCCTCGAGTTGCTTTCCTGCAAAAATCAACCTCTGCTGGTCTGGGGGG 271918 Query 171963 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACT 172022 ||||| || || ||||| || || | || || || ||||||||||| || || Sbjct 271917 ATTCCCTCCTTGTCTTGAATCTTCGTCTTCACGTTGTCGATAGTATCTGAGCTCTCAACC 271858 Query 172023 TCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070 || ||||||||||| |||||||| || || || | ||| ||||||||| Sbjct 271857 TCAAGAGTAATGGTCTTACCAGTCAAGGTCTTCACGAAAATCTGCATT 271810 Score = 84.2 bits (92), Expect = 4e-11 Identities = 69/84 (82%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 171913 CGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTT 171972 |||| ||||| || |||||||||||||| |||| ||| || || ||||| ||||| || | Sbjct 271059 CGTCCTCCAACTGCTTACCAGCAAAAATCAATCGCTGCTGATCTGGTGGAATTCCCTCCT 271000 Query 171973 TATCTTGTATTTTATTTTTTACAT 171996 | ||||||||||| |||| |||| Sbjct 270999 TGTCTTGTATTTTGGTTTTCACAT 270976 Score = 84.2 bits (92), Expect = 4e-11 Identities = 112/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 171913 CGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTT 171972 |||| || | ||| || ||||| |||||||| ||| ||||| ||||| || || |||| Sbjct 271739 CGTCCTCAAGTTGCTTCCCAGCGAAAATTAAAAGCTGCTGGTCTGGTGGAATGCCCTCTT 271680 Query 171973 TATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAA 172032 ||||||| || || | || || || || || || || || || || ||||| | Sbjct 271679 TATCTTGAATCTTGGTCTTCACGTTGTCAATCGTGTCGGAGCTCTCAACCTCAAGAGTGA 271620 Query 172033 TGGTTTTACCAGTTAATGTTTTAATGAATATCTGCA 172068 |||| ||||| || ||||| || | || ||||||| Sbjct 271619 TGGTCTTACCGGTCAATGTCTTCACAAAAATCTGCA 271584 >seq2625 Length=346021 Score = 114 bits (126), Expect = 2e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 171843 CCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGAT 171902 ||||| | ||| || | || || || ||||||| || || ||||||||||| | | Sbjct 282245 CCACCACGAAGACGGAGCACCAAGTGCAAAGTAGATTCCTTTTGGATATTATAATCCGCT 282186 Query 171903 AAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGT 171962 | | || | | || || | ||| || || || ||||| || ||||| ||||| || || Sbjct 282185 AGAATTCTTCCATCCTCGAGTTGCTTTCCTGCGAAAATCAACCTCTGCTGGTCTGGGGGG 282126 Query 171963 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACT 172022 ||||| || || ||||| || || | || || || ||||||||||| || || Sbjct 282125 ATTCCCTCCTTGTCTTGAATCTTCGTCTTCACGTTGTCGATAGTATCTGAGCTCTCAACC 282066 Query 172023 TCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070 || ||||||||||| ||||| || || || || | ||| ||||||||| Sbjct 282065 TCAAGAGTAATGGTCTTACCTGTCAAGGTCTTCACGAAAATCTGCATT 282018 Score = 104 bits (114), Expect = 4e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||| || || | || || || | ||| | ||||| ||| || ||||||||||| Sbjct 281108 ATACCTCCCCTCAATCTCAAGACGAGATGGAGAGTAGACTCCTTCTGTATATTATAATCG 281049 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | | | ||| |||| ||||| || ||||| ||||| || |||||||||||||| || Sbjct 281048 GCCAGCGTTCGGCCGTCCTCCAACTGCTTACCTGCAAAGATCAATCTCTGTTGGTCTGGA 280989 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || || || |||||||| || || |||| || || || || || || ||| Sbjct 280988 GGAATACCCTCCTTATCTTGGATCTTGGTTTTGACGTTGTCGATGGTGTCGGAGCTTTCG 280929 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || | || ||||| || || || | || || | ||||||||||| Sbjct 280928 ACCTCCAAGGTGATGGTCTTTCCTGTAAGCGTCTTCACAAATATCTGCAT 280879 >seq4073 Length=488838 Score = 104 bits (114), Expect = 4e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||| ||||| || || | || | ||| | |||| |||||| |||||||| ||| Sbjct 173226 ATACCTCCTCTGAGACGGAGCACAAGATGCAGGGTAGACTCTTTCTGTATATTATAGTCT 173285 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | | || ||| | || || | || ||||| || || || || ||||| || ||||| Sbjct 173286 GCCAGAGTTCGCCCATCTTCGAGCTGCTTACCGGCGAAGATCAACCTCTGCTGATCAGGA 173345 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || ||||||||||| || || ||||| || || || || || || || ||| Sbjct 173346 GGGATTCCTTCTTTGTCCTGGATTTTCGCCTTGACGTTGTCGATCGTGTCGGAGCTTTCC 173405 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || |||| ||||||||| || ||||| || || || | || |||||||| Sbjct 173406 ACCTCTAAAGTAATGGTCTTGCCAGTCAAGGTCTTGACAAAAATCTGCAT 173455 Score = 86.0 bits (94), Expect = 1e-11 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || || ||||| |||| || || ||||| | ||| | ||| || || || ||||| Sbjct 173682 ATCCCGCCTCTCAGTCTCAACACCAAATGGAGAGTCGACTCCTTCTGGATGTTGTAATCC 173741 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | | || || | || || | || || || ||||| || || ||||| |||||||| Sbjct 173742 GCCAGAGTGCGACCATCCTCGAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCAGGA 173801 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || || || || ||||| || ||| ||| |||||| || ||||| || || Sbjct 173802 GGGATCCCCTCCTTGTCTTGAATCTTAACTTTCACATTATCGATCGTATCGGAGCTCTCC 173861 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || | || ||||| || || || | || || | |||||||||||| Sbjct 173862 ACCTCCAACGTGATGGTCTTCCCCGTCAGCGTCTTCACGAATATCTGCAT 173911 >seq487 Length=466406 Score = 100 bits (110), Expect = 5e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||| || || | || | || ||||| | ||| | ||| || || || || ||| Sbjct 176809 ATACCTCCCCTCAACCGAAGCACCAAATGAAGAGTGGACTCCTTTTGGATGTTGTAGTCT 176750 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | | || ||| |||| || | || ||||| ||||| || | ||||| ||||| || Sbjct 176749 GCAAGAGTTCGGCCGTCCTCGAGCTGCTTACCGGCAAAGATCAGCCTCTGCTGGTCTGGA 176690 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || ||||| || || || || ||||| ||| || ||| || ||||| || |||| Sbjct 176689 GGAATTCCCTCCTTGTCCTGAATTTTGGCTTTGACGTTATCAATGGTATCGGAGCTTTCT 176630 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||||| ||| || || ||||| || | |||||| | || |||||||| Sbjct 176629 ACTTCTAAAGTGATAGTCTTACCGGTGAGTGTTTTCACAAAAATCTGCAT 176580 Score = 95.1 bits (104), Expect = 2e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||| || || || || | || ||||| | ||| | ||| || || ||||| || Sbjct 177265 ATACCTCCCCTGAGACGAAGCACCAAATGGAGAGTGGACTCCTTTTGGATGTTATAGTCC 177206 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | | || ||| | || || | || || || || || || | |||||| ||||| || Sbjct 177205 GCGAGAGTTCGGCCATCTTCGAGCTGCTTGCCGGCGAAGATCAGTCTCTGCTGGTCTGGG 177146 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || ||||||||||| ||||| || ||| || |||||| || || || || ||| Sbjct 177145 GGAATTCCTTCTTTGTCTTGAATCTTAGCCTTGACATTATCGATGGTGTCGGAGCTTTCC 177086 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || |||||||| || ||||| || | || || | ||| |||||||| Sbjct 177085 ACCTCCAGAGTAATTGTCTTACCCGTGAGGGTCTTCACGAAGATCTGCAT 177036 >seq4017 Length=874442 Score = 86.0 bits (94), Expect = 1e-11 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||||||||| | | || || | || | |||| ||| || ||| || || || Sbjct 472660 ATACCACCTCTCAACCTCAACACGAGGTGGAGGGTAGACTCCTTTTGAATGTTGTAGTCG 472601 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | | || || |||| || | |||||||| || || || || | ||| ||||| || Sbjct 472600 GCCAGAGTTCTACCGTCCTCAAGCTGTTTACCTGCGAAGATCAAACGCTGCTGGTCTGGG 472541 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || || || |||||||| || ||| | || |||||| || || || || || Sbjct 472540 GGAATACCCTCCTTATCTTGGATCTTAGTCTTCACATTATCGATGGTGTCGGAACTCTCA 472481 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || ||||||||||| || || || || || || | ||| || ||||| Sbjct 472480 ACCTCGAGAGTAATGGTCTTTCCTGTCAACGTCTTGACGAAGATTTGCAT 472431 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905089193154600