Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marchantia_20polymorpha_20subsp._20ruderalis_20[genbank_20GCA_5F0016 41455.1_202016-05-10] 4,137 sequences; 205,718,403 total letters Query= NC_021298.1 Length=51252 Score E Sequences producing significant alignments: (Bits) Value seq1013 890 0.0 >seq1013 Length=3715 Score = 890 bits (986), Expect = 0.0 Identities = 1908/2802 (68%), Gaps = 138/2802 (5%) Strand=Plus/Minus Query 39011 CAGACCCTTGCGGGTTGCTCCGGTGGAGTCGAACGCACCGGCCTTGATCAAGGACTCGAT 39070 ||| |||||||||| ||| ||||||||||| || |||||||||| ||||||| Sbjct 2847 CAGGCCCTTGCGGGAGTGGCCGAGCGAGTCGAACGCGCCCGCCTTGATCAGCGACTCGAC 2788 Query 39071 GGCTCGCTTGCTCACGGTCGCCTGAGTCGCTGCCTT---CAGGAAGTCCGGCAGGGAGGT 39127 | | |||| | | | || | | |||| |||| ||||||||| | | | | Sbjct 2787 GACCTTCTTGTTG-CAGACGACCGCGTCGA--CCTTGCGCAGGAAGTCGGAGAAGTCGAC 2731 Query 39128 GAACTTCCCCCAGGCTTCCCGGAGTTCGGCGATCTCCGCGACCATGCCCTCG---CCCAC 39184 ||| |||||| ||||| | |||||| |||| | | | | | | || || Sbjct 2730 GAAGTTCCCCTTC---TCCCGCCGCGCGGCGACGATCGCGTCGACGACGTTGTGCCCGAC 2674 Query 39185 GTTCTTCACGGCGGTCAGCCCGAAGCGGATCTCGTGCTCCCCGTTGGGGGTGAACGAGCT 39244 ||| | | || || ||||| ||||| |||| | ||| || | ||| || Sbjct 2673 GTTGCGGATGCCGCCGAGGCCGAAACGGATGTCGT---CGCCGACCGGCGCGAAGTTGCG 2617 Query 39245 GTTCGAGACCGACACGTCGGGCGGCAGGACCCGAAGGCCCATGCGCCGAGACTCGCCGAG 39304 |||| | ||||||||||| |||||| | |||||| || || |||| | || Sbjct 2616 CACCGAGTCGTTGACGTCGGGCGGGAGGACCGTGATGCCCATCCGGCGGCACTCCGCCAG 2557 Query 39305 GTA---CGTGGCCATCTTGTTCTTGTCGTCGCCCACCGAGGTGAGCGCAGCCGCCATGTA 39361 ||| || |||| |||| ||||||||||| ||||||||||||| | | |||||||| Sbjct 2556 GTAGACCGCGGCC---TTGTCCTTGTCGTCGCGCACCGAGGTGAGCACGCCGGCCATGTA 2500 Query 39362 CTCGGCTGGGTAGTGCGTCTTCAGCCACGCCGTGCGGTACGCGATGAGTCCGTACGCCGC 39421 |||||| ||||||| || ||| || | ||||| | ||||| | | ||||| || || Sbjct 2499 CTCGGCCGGGTAGTTCGCCTTGAGGTAGGCCGTCCAGTACGACACCACGCCGTAGGCGGC 2440 Query 39422 CGAGTGCGCCTTGTTGAAGGCGTAGCCAGCGAACGGGACCAGCACGTCCCACACTGCCTG 39481 ||||| || ||||||||||||| | | |||||||| ||| | |||||| | | || Sbjct 2439 GGAGTGGGCGCGGTTGAAGGCGTAGTCGGAGAACGGGAGCAGGATGTCCCAGAGAGTCTT 2380 Query 39482 GATGGCACCGTCCGAGTAGCCTCGCTCGCGCGCTCCCTTCTGGAAGTTCACGAACTCCTT 39541 || || | | |||||||| || | |||| |||| || ||||||| Sbjct 2379 GACCGCGGCCGCGGAGTAGCCGTTGTCCTTCATGCCCTGGGCGAAGCCGGCGTACTCCTT 2320 Query 39542 GGCCAGAACCTCGGGCTTCTTCTTGCCCATCGCCCGGCGAAGCAGGTCGGCCTGACCGAG 39601 | |||| | ||| |||||||||||||||||| ||||| |||||||| ||||| ||||| Sbjct 2319 GTCCAGGATCTCCTTCTTCTTCTTGCCCATCGCGCGGCGGAGCAGGTCCGCCTGGCCGAG 2260 Query 39602 GGTGTACCCGGCCATGACCTGCGCAACCTTCTGCACCTGCTCCTGGTAGATGATGAGCTG 39661 ||||| || |||| |||||||| | | ||||| |||||||| | ||| || Sbjct 2259 CGTGTAGCCCGCCAGCACCTGCGCGATGGACATGACCTGTTCCTGGTACACGATCAGGCC 2200 Query 39662 GAAGGTCGGGTCCAGGATCTCCGACAGGGACTCGGCCACCTCGGGGTGGATCGGCGTGAT 39721 ||||||| | |||| ||| || | |||||||| ||| ||||||||||||||||| Sbjct 2199 GAAGGTCTCACCGAGGACGTCCTTGAGCGGCTCGGCCAGCTCCGGGTGGATCGGCGTGAT 2140 Query 39722 CGCCTGCTGCCCGTTCTTACGGAGGGCGTAGTTCGTGTGAGACCCCACGCCCATCGGACC 39781 | ||||| | |||||||| ||| |||||||| |||| | | | |||||||| || Sbjct 2139 CTCCTGCCGGCCGTTCTTGCGGTCGGCGTAGTCGTTGTGCGCGTTCGCCCCCATCGGGCC 2080 Query 39782 CGGACGGTACAGCGCGACGACGGCCGAGATGTCCTCGAAGTTGTCCGGCTTCAGCAGACG 39841 ||| |||||||||||| |||| || ||||||| |||||| | | ||| || | || Sbjct 2079 CGGGCGGTACAGCGCGCCGACCGCGGAGATGTGCTCGAACTCGCTGGGCGCCATGCGGCG 2020 Query 39842 GAGCAGTGAGCGCATCGCGCCGCCGTCGAGCTGGAAGACCGAGAGCGTGTCGCCCCTGGC 39901 ||||| ||||||| |||||||||||||||||| || || ||||| || | || Sbjct 2019 CAGCAGATCCCGCATCGGGCCGCCGTCGAGCTGGAACACACCCAGGGTGTCCCCGCGGGA 1960 Query 39902 CAGCAGCTCGTACGTCGCGGGGTCGTCCAGGGGGATGTTCTCCAGGTCGACGT---GCTC 39958 ||||||||||| ||| ||||||| || || | |||||||||||| ||| Sbjct 1959 GAGCAGCTCGTAGGTCTTCCGGTCGTCGAGCTCGACCTCGTCCAGGTCGACGGCGGGCTT 1900 Query 39959 CCCACGGTTGAGGCGGATGTTCTCGACCGCGTCGCCCATGATCGTGAGGTTCCGGAGCCC 40018 || |||||| ||||||||| | |||||| | | ||| |||||||| || ||||| Sbjct 1899 GCC---GTTGAGCTCGATGTTCTCCAGGGCGTCGTCGAGGATGGTGAGGTTGCGCAGCCC 1843 Query 40019 GAGGAAGTCCATCTTCAGCAGGCCCAGAGCCTCGCAGCTCGGGTA-GTCGAACTGCGTGA 40077 ||||||||||||||||||||||| | | ||||||| || | |||||||||||||| Sbjct 1842 CAGGAAGTCCATCTTCAGCAGGCCGATGGTCTCGCAGA-CGCCCATGTCGAACTGCGTGA 1784 Query 40078 TCGTCGCGCCGTC---CT-GCGGTCGCACCCACACCGGGATGTGGTCGACCAGAGGC-TC 40132 | |||||||||| || |||| ||| | |||||| ||||| || ||| || Sbjct 1783 TGATCGCGCCGTCGGACTCGCGG-CGCTGG---ATCGGGATCACGTCGATCAACGGCGTC 1728 Query 40133 GTCGGACATGATCACACCGGCTGCGTGCACACCCATCTGCCGGACGAGACCTTCGAGACC 40192 | |||||||||||| || || |||||||||||| |||||| || || ||||| || Sbjct 1727 GA-GGACATGATCACGCCCGCGGCGTGCACACCCCACTGCCGCTTCAGTCCCTCGAGGCC 1669 Query 40193 GAGCGCGGTGTCGATGACCTCCTTGGCGTCCGGGTCGGAGCCGTAGATGCCCCGGATCTC 40252 |||||||||||| || ||||||| | | |||||| | |||||| | | |||| ||| Sbjct 1668 CCGCGCGGTGTCGACGATCTCCTTGACCTGCGGGTCCGCCTCGTAGAGGGCGCGGACCTC 1609 Query 40253 GGCGGCCTCCTCGTACCGAGGGTGCTCGGCGTTGAAGAT-CCCGTCGAGGGGCATCGAGT 40311 || ||||| |||||| |||| | || |||||| |||| | || || || | Sbjct 1608 GGTCGCCTCGGAGTACCGCTTGTGCGACGGGTCGAAGATGCCCGAC-AGCGGGATGTCCT 1550 Query 40312 TGCCCATCACGTCGGCCGGGTACGCCTTGGTCAGCTTC--TCGCCGACCTGGAAG---GG 40366 |||||||||| ||| ||| ||||||| || | | ||| |||| | || || Sbjct 1549 TGCCCATCACCGCGGGCGGCATGGCCTTGG--AGATGCGGTCGGCGACGGAGTAGCCGGG 1492 Query 40367 CTTGTC---CAGCACGCGGGCTGCGTCCTTCATCGCGTTGCGCGCCTTGATCCGTCC-GT 40422 || | | |||||| || || | |||||| |||||| |||||||||| ||| || Sbjct 1491 CTGGCCGAACAGCACCCGCGCCGAGTCCTTGATCGCGGCCTTCGCCTTGATC-GTCGAGT 1433 Query 40423 ACGTCGCGATCTGCGCGACCTTGTCGGCCCCGTACTTCCGGGTGACGTACTGGATCACCT 40482 | || ||||||||||| | ||| | ||||||||| ||||||||| |||||| || Sbjct 1432 AGGTGATGATCTGCGCGATCCGGTCCTCGCCGTACTTCTCGGTGACGTAGCGGATCATCT 1373 Query 40483 CGCCACGACGCCGGTCATCGAAGTCGATGTCGACATCGGGCATGGACACGCGCTCGGGGT 40542 |||| || ||||| || |||||||| ||||||| |||||||| ||||| || || |||| Sbjct 1372 CGCCGCGCCGCCGCTCGTCGAAGTCCATGTCGATGTCGGGCATCGACACACGGTCCGGGT 1313 Query 40543 TCAGGAACCGCTCGAAGATGAGTCCGTGCTCCAGCGGGTCGAGGTCGGTGATCCCGAGGA 40602 ||||||||||||||||||| || |||| | |||||||||||||||||| || |||| Sbjct 1312 TCAGGAACCGCTCGAAGATCAGCTTGTGCCGGATCGGGTCGAGGTCGGTGATGCCCAGGA 1253 Query 40603 CGTAGGCGACCAGCGAACCGGCCGCAGAGCCTCGCCCAGGGCCGACCCAGACGCCGTTCT 40662 |||||||||||||||| || ||||| ||||| || || |||||| | || |||| | Sbjct 1252 CGTAGGCGACCAGCGAGCCCGCCGCCGAGCCACGGCCGGGGCCGCAGCGGATGCCGACCG 1193 Query 40663 CCTTCGCCCAGCGGATGAAGTCCGCGACGACGAGGAAGTACGACGGGAAGCCCATCTGGA 40722 ||| || |||||| ||||||| || |||||||| ||| ||||||||| || Sbjct 1192 ACTTGGCGTGCTGGATGAGGTCCGCGGTCACCAGGAAGTAGCCGGGGTAGCCCATCTTGA 1133 Query 40723 TGATCATGTCGATCTCGTACTGGAGCTGCTTGCCG----TGCTCGTAGTCCGTGCCGTTC 40778 |||| | | ||| |||||| | | |||| ||||| | |||| | | ||||| Sbjct 1132 TGATGACGCCGACCTCGTAGTTGGCCTGC-TGCCGGTACTTCTCGGTGAC---GCCGTCG 1077 Query 40779 GGGTACCGACGACGCGCGCCTCGGGCGACCTCGTCCTCGAACCAGGTGATCTCCGTGTGC 40838 ||| |||| || || || ||||||| | | ||||| ||| || | | Sbjct 1076 GGGAACCGCATGTGCAGTCCCCGCTCGACCTCCTTGATCAGCCAGGACTCCTCGGTCTCC 1017 Query 40839 CCCTCGGGCACCGGGAACTTCGGCATCAGGTTCT----CGTGCTCGAACATGCCGGTGGT 40894 |||||||| || || ||| ||| |||| || ||| | ||| | || || | Sbjct 1016 CCCTCGGGGACGGGCGCCTTGGGCTGGAGGTCCTGGCCGGTGGT-GAA---GTCGATGTT 961 Query 40895 GTCGACCATCTCGGCGATGTCCAGCGTGGT-CCGCATCCCCCACTCCCAGATGGGAGAGG 40953 | | |||||||| | ||||||| | |||| || | ||| || Sbjct 960 GCAG---CGCTCGGCGACGAGCAGCGTGTTGTCGCAGGCCTC-GGGGTGGATCGGGTCCC 905 Query 40954 AGTCGATGGCCGCCATCTCGGCGGCCGACTTCAGGTAGTA-CCCGGAGCCCTCGAAGCGG 41012 || | |||| |||||||||||| ||||| |||||| | || | | | ||||| | Sbjct 904 AG-AGCTGGC--GCATCTCGGCGGCGGACTTGAGGTAGAAGTCCTGCG-CGTCGAACTTG 849 Query 41013 AAGCGGTGAGGGTTATCGAGCGTGGTGCCGGTCTGGACGCACAGCAGTGCATCGTGAGCG 41072 || |||| |||| |||| || ||||||||||||||||||| || | ||||| || Sbjct 848 AACCGGTTCGGGTCCGCGAGGGTCTTGCCGGTCTGGACGCACAGGAGCACCTCGTGCGCC 789 Query 41073 ACCGACTCCTCGGCGGTGACGTAGTGGGAATCGTTCGTGACCA--CCGGAGTGAGCGCGA 41130 | || || | | | |||||| |||||||| | | ||| | || ||| Sbjct 788 TTGGTGTCGTCCGGGTAGGTGTAGTGCAGGTCGTTCGTCGCGAGGCCG--GGCAGGTCGA 731 Query 41131 GGTGCTTCCCGAGCCGGTACAGATCCTCGCGGACCCGGCGCTCGATCTCGATGCCGTGGT 41190 | | | | ||||||| |||| ||||| ||||||| |||||||||||||||||||| Sbjct 730 GCTTGTCCTTGAGCCGGAACAGGTCCTCCTGGACCCGCTTCTCGATCTCGATGCCGTGGT 671 Query 41191 CCATGAGTTCGAGCAGGTAGCGCTCGCGACCCAGGATCTCCAGCCAGTCGCCAGCGGCCC 41250 |||| || || || | | || || || | ||| || | |||||| |||||| Sbjct 670 CCATCAGCTCCAGGAAGAAGTTGTCCTTCCCGAAGATGTCGCGGTAGTCGCTCGCGGCCT 611 Query 41251 TGACTGCCTCGTCGTACTGACCCAGGTTCAGCCTGGTCATGACTTCGCCACCAGGGCACC 41310 | ||| ||||| | | | | | ||| | | ||| ||||| ||||| | Sbjct 610 GGCAGGCCGCGTCGAAGTCGTGCTGCTGGAGCAGGCGCGCGACCTCGCCGGACGGGCAGC 551 Query 41311 CCGTGGTTCCGATGATGCCCTCGCTGCACTCGGCGACGAGTTCCTTGTCGAGGCG-GGC- 41368 |||| || |||| | ||||| || | ||| | | || || ||| | || ||| Sbjct 550 CCGTCGTCGCGATCAGGCCCTTGCCGTACTTCTCCAGCAGCTCGCGGTCCATACGCGGCT 491 Query 41369 -GTACTTGCCCATCAGCCCCTCCTGGTAGG--AGCGAGACGTGATGCGCATGAGGTTGTG 41425 ||| | | || ||||| || || |||||| | || || | ||||||||| Sbjct 490 TGTAGT-----AGTAG-CCCTCGAGGCTGGCCAGCGAG--GAGAGCCGGAAGAGGTTGTG 439 Query 41426 AAGGCCCGTCTTGTTCTGCGCGAGCATGGTCATGTGCGTGTACGCACCGTTACCCGACAC 41485 | ||| | |||||| |||||||| |||||||| |||| ||| Sbjct 438 CATCCCCTCCGTGTTCTCCGCGAGCAGCGTCATGTGGGTGT---------------ACAT 394 Query 41486 GTCGTAACGCTTCTGCTCG--GGCGACCCCCACTTGACCCGGTCAAGGCTT---CGCCTG 41540 | || | || | |||| | || |||| | |||| |||| | | || Sbjct 393 GAGGTCGGGGTTGTTCTCGCTGCCGTTGCCCA----GCGCGGT--GCGCTTGCGCTCGTG 340 Query 41541 TCG----CCGGGGGCGACGTAGGCTTCCATTCCCACGATGGGCTTGATGCCCGCTGCGGT 41596 || ||||| |||| |||| | ||||| || | ||| ||||||| | | || | Sbjct 339 CCGCGACCCGGGCGCGAGGTAGCCCTCCATGCCGATGATCGGCTTGACGTCGTGCGCCTT 280 Query 41597 GGCCT---GCTTGAACAGCTCGTAGGCACCATGCATGTGGCCGTGGTCGGTCACTGCGAT 41653 |||| || ||| |||| |||| || | | || |||||||||||||| ||||| Sbjct 279 CGCCTTGCGCCAGAA---CTCGAAGGCGCCGTAGACGTTGCCGTGGTCGGTCATCGCGAT 223 Query 41654 GGCTCGCATCCCCTGACGCTT---GGCCTCGGCGACCATCTTCTCGATCTTGGCGTGCCC 41710 ||| ||||| | | |||| |||||||| || || | |||| | |||| || Sbjct 222 GGCCGGCATCTCGT---GCTTGGCGGCCTCGGAGAACAGGTCGTCGAGCCGGGCGGCACC 166 Query 41711 GTCGAGGAGCGAGAACTCTGAGTGGGCATGGAGATGAACGAA 41752 ||| || | ||||||||| | ||| | || ||||||||||| Sbjct 165 GTCCAGCATCGAGAACTCGGTGTGCGTGTGCAGATGAACGAA 124 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 163876748851916