Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marchantia_20polymorpha_20subsp._20ruderalis_20[genbank_20GCA_5F0016 41455.1_202016-05-10] 4,137 sequences; 205,718,403 total letters Query= NC_021304.1 Length=51552 Score E Sequences producing significant alignments: (Bits) Value seq1013 924 0.0 >seq1013 Length=3715 Score = 924 bits (1024), Expect = 0.0 Identities = 1904/2788 (68%), Gaps = 108/2788 (4%) Strand=Plus/Minus Query 39299 CAGACCCTTGCGGGTTGCTCCGGTGGAGTCGAACGCACCGGCCTTGATCAAGGACTCGAT 39358 ||| |||||||||| ||| ||||||||||| || |||||||||| ||||||| Sbjct 2847 CAGGCCCTTGCGGGAGTGGCCGAGCGAGTCGAACGCGCCCGCCTTGATCAGCGACTCGAC 2788 Query 39359 GGCTCGCTTGCTCACGGTCGCCTGAGTCGCTGCCTT---CAGGAAGTCCGGCAGGGAGGT 39415 | | |||| | | | || | | |||| |||| ||||||||| | | | | Sbjct 2787 GACCTTCTTGTTG-CAGACGACCGCGTCGA--CCTTGCGCAGGAAGTCGGAGAAGTCGAC 2731 Query 39416 GAACTTCCCCCAGGCTTCCCGGAGTTCGGCGATCTCCGCGACCATGCCCTCG---CCCAC 39472 ||| |||||| ||||| | |||||| |||| | | | | | | || || Sbjct 2730 GAAGTTCCCCTTC---TCCCGCCGCGCGGCGACGATCGCGTCGACGACGTTGTGCCCGAC 2674 Query 39473 GTTCTTCACGGCGGTCAGCCCGAAGCGGATCTCGTGCTCCCCGTTGGGGGTGAACGAGCT 39532 ||| | | || || ||||| ||||| |||| | ||| || | ||| || Sbjct 2673 GTTGCGGATGCCGCCGAGGCCGAAACGGATGTCGT---CGCCGACCGGCGCGAAGTTGCG 2617 Query 39533 GTTCGAGACCGACACGTCGGGCGGCAGGACCCGCAGGCCCATGCGCCGAGACTCGCCGAG 39592 |||| | ||||||||||| |||||| | |||||| || || |||| | || Sbjct 2616 CACCGAGTCGTTGACGTCGGGCGGGAGGACCGTGATGCCCATCCGGCGGCACTCCGCCAG 2557 Query 39593 GTA---CGTGGCCATCTTGTTCTTGTCGTCGCCCACCGAGGTGAGCGCAGCCGCCATGTA 39649 ||| || |||| |||| ||||||||||| ||||||||||||| | | |||||||| Sbjct 2556 GTAGACCGCGGCC---TTGTCCTTGTCGTCGCGCACCGAGGTGAGCACGCCGGCCATGTA 2500 Query 39650 CTCGGCTGGGTAGTGCGTCTTCAGCCACGCCGTGCGGTACGCGATGAGTCCGTACGCCGC 39709 |||||| ||||||| || ||| || | ||||| | ||||| | | ||||| || || Sbjct 2499 CTCGGCCGGGTAGTTCGCCTTGAGGTAGGCCGTCCAGTACGACACCACGCCGTAGGCGGC 2440 Query 39710 CGAGTGCGCCTTGTTGAAGGCGTAGCCAGCGAACGGGACCAGCACGTCCCACACTGCCTG 39769 ||||| || ||||||||||||| | | |||||||| ||| | |||||| | | || Sbjct 2439 GGAGTGGGCGCGGTTGAAGGCGTAGTCGGAGAACGGGAGCAGGATGTCCCAGAGAGTCTT 2380 Query 39770 GATGGCACCGTCCGAGTAGCCTCGCTCGCGCGCTCCCTTCTGGAAGTTCACGAACTCCTT 39829 || || | | |||||||| || | |||| |||| || ||||||| Sbjct 2379 GACCGCGGCCGCGGAGTAGCCGTTGTCCTTCATGCCCTGGGCGAAGCCGGCGTACTCCTT 2320 Query 39830 GGCCAGAACCTCGGGCTTCTTCTTGCCCATCGCCCGGCGAAGCAGGTCGGCCTGACCGAG 39889 | |||| | ||| |||||||||||||||||| ||||| |||||||| ||||| ||||| Sbjct 2319 GTCCAGGATCTCCTTCTTCTTCTTGCCCATCGCGCGGCGGAGCAGGTCCGCCTGGCCGAG 2260 Query 39890 GGTGTACCCGGCCATGACCTGTGCAACCTTCTGCACTTGCTCCTGGTAGATGATGAGCTG 39949 ||||| || |||| ||||| || | | || || |||||||| | ||| || Sbjct 2259 CGTGTAGCCCGCCAGCACCTGCGCGATGGACATGACCTGTTCCTGGTACACGATCAGGCC 2200 Query 39950 GAAGGTCGGGTCCAGGATCTCCGACAGGGACTCGGCCACCTCGGGGTGGATCGGCGTGAT 40009 ||||||| | |||| ||| || | |||||||| ||| ||||||||||||||||| Sbjct 2199 GAAGGTCTCACCGAGGACGTCCTTGAGCGGCTCGGCCAGCTCCGGGTGGATCGGCGTGAT 2140 Query 40010 CGCCTGCTGCCCGTTCTTCCGGAGGGCGTAGTTCGTGTGAGACCCCACGCCCATCGGACC 40069 | ||||| | |||||||| ||| |||||||| |||| | | | |||||||| || Sbjct 2139 CTCCTGCCGGCCGTTCTTGCGGTCGGCGTAGTCGTTGTGCGCGTTCGCCCCCATCGGGCC 2080 Query 40070 AGGACGGTACAGCGCGACGACGGCCGAGATGTCCTCGAAGTTGTCCGGCTTCAGCAGACG 40129 || |||||||||||| |||| || ||||||| |||||| | | ||| || | || Sbjct 2079 CGGGCGGTACAGCGCGCCGACCGCGGAGATGTGCTCGAACTCGCTGGGCGCCATGCGGCG 2020 Query 40130 GAGCAGTGAGCGCATCGCGCCGCCGTCGAGCTGGAAGACCGAGAGCGTGTCGCCCCTGGC 40189 ||||| ||||||| |||||||||||||||||| || || ||||| || | || Sbjct 2019 CAGCAGATCCCGCATCGGGCCGCCGTCGAGCTGGAACACACCCAGGGTGTCCCCGCGGGA 1960 Query 40190 CAGCAGCTCGTACGTCGCGGGGTCGTCCAGGGGGATGTTCTCCAGGTCGACGT---GCTC 40246 ||||||||||| ||| ||||||| || || | |||||||||||| ||| Sbjct 1959 GAGCAGCTCGTAGGTCTTCCGGTCGTCGAGCTCGACCTCGTCCAGGTCGACGGCGGGCTT 1900 Query 40247 CCCACGGTTGAGGCGGATGTTCTCGACCGCGTCGCCCATGATCGTGAGGTTCCGGAGCCC 40306 || |||||| ||||||||| | |||||| | | ||| |||||||| || ||||| Sbjct 1899 GCC---GTTGAGCTCGATGTTCTCCAGGGCGTCGTCGAGGATGGTGAGGTTGCGCAGCCC 1843 Query 40307 GAGGAAGTCCATCTTCAGCAGGCCCAGAGCCTCGCAGCTCGGGTA-GTCGAACTGCGTGA 40365 ||||||||||||||||||||||| | | ||||||| || | |||||||||||||| Sbjct 1842 CAGGAAGTCCATCTTCAGCAGGCCGATGGTCTCGCAGA-CGCCCATGTCGAACTGCGTGA 1784 Query 40366 TCGTCGCGCCGTC---CT-GCGGCCGAACCCACACCGGGATGTGGTCGACCAGCGGC-TC 40420 | |||||||||| || ||||| | | |||||| ||||| || |||| || Sbjct 1783 TGATCGCGCCGTCGGACTCGCGGCG----CTGGATCGGGATCACGTCGATCAACGGCGTC 1728 Query 40421 GTCGGACATGATCACACCGGCTGCGTGCACACCCATCTGCCGGACGAGACCTTCGAGACC 40480 | |||||||||||| || || |||||||||||| |||||| || || ||||| || Sbjct 1727 GA-GGACATGATCACGCCCGCGGCGTGCACACCCCACTGCCGCTTCAGTCCCTCGAGGCC 1669 Query 40481 GAGCGCGGTGTCGATGACCTCCTTGGCGTCCGGGTCGGAGCCGTAGATGCCCCGGATCTC 40540 |||||||||||| || ||||||| | | |||||| | |||||| | | |||| ||| Sbjct 1668 CCGCGCGGTGTCGACGATCTCCTTGACCTGCGGGTCCGCCTCGTAGAGGGCGCGGACCTC 1609 Query 40541 GGCGGCCTCCTCGTACCGAGGGTGCTCGGCGTTGAAGAT-CCCGTCGAGGGGCATCGAGT 40599 || ||||| |||||| |||| | || |||||| |||| | || || || | Sbjct 1608 GGTCGCCTCGGAGTACCGCTTGTGCGACGGGTCGAAGATGCCCGAC-AGCGGGATGTCCT 1550 Query 40600 TGCCCATCACGTCGGCCGGGTACGCCTTGGTCAGCTTC--TCGCCGACCTGGAAG---GG 40654 |||||||||| ||| ||| ||||||| || | | ||| |||| | || || Sbjct 1549 TGCCCATCACCGCGGGCGGCATGGCCTTGG--AGATGCGGTCGGCGACGGAGTAGCCGGG 1492 Query 40655 CTTGTC---CAGCACGCGGGCTGCGTCCTTCATCGCGTTGCGCGCCTTGATCCGTCC-GT 40710 || | | |||||| || || | |||||| |||||| |||||||||| ||| || Sbjct 1491 CTGGCCGAACAGCACCCGCGCCGAGTCCTTGATCGCGGCCTTCGCCTTGATC-GTCGAGT 1433 Query 40711 ACGTCGCGATCTGCGCGACCTTGTCGGCCCCGTACTTCCGGGTGACGTACTGGATCACCT 40770 | || ||||||||||| | ||| | ||||||||| ||||||||| |||||| || Sbjct 1432 AGGTGATGATCTGCGCGATCCGGTCCTCGCCGTACTTCTCGGTGACGTAGCGGATCATCT 1373 Query 40771 CGCCACGACGCCGGTCATCGAAGTCGATGTCGACATCGGGCATGGACACGCGCTCGGGGT 40830 |||| || ||||| || |||||||| ||||||| |||||||| ||||| || || |||| Sbjct 1372 CGCCGCGCCGCCGCTCGTCGAAGTCCATGTCGATGTCGGGCATCGACACACGGTCCGGGT 1313 Query 40831 TCAGGAACCGCTCGAAGATGAGCCCGTGCTCCAGCGGGTCGAGGTCGGTGATCCCGAGGA 40890 ||||||||||||||||||| ||| |||| | |||||||||||||||||| || |||| Sbjct 1312 TCAGGAACCGCTCGAAGATCAGCTTGTGCCGGATCGGGTCGAGGTCGGTGATGCCCAGGA 1253 Query 40891 CGTAGGCGACCAGCGAACCGGCCGCAGAGCCTCGCCCAGGGCCGACCCAGACGCCGTTCT 40950 |||||||||||||||| || ||||| ||||| || || |||||| | || |||| | Sbjct 1252 CGTAGGCGACCAGCGAGCCCGCCGCCGAGCCACGGCCGGGGCCGCAGCGGATGCCGACCG 1193 Query 40951 CCTTCGCCCAGCGGATGAAGTCCGCGACGACGAGGAAGTACGACGGGAAGCCCATCTGGA 41010 ||| || |||||| ||||||| || |||||||| ||| ||||||||| || Sbjct 1192 ACTTGGCGTGCTGGATGAGGTCCGCGGTCACCAGGAAGTAGCCGGGGTAGCCCATCTTGA 1133 Query 41011 TGATCATGTCGATCTCGTACTGGAGCTGCTTGCCG----TGCTCGTAGTCCGTGCCGTTC 41066 |||| | | ||| |||||| | | |||| ||||| | |||| | | ||||| Sbjct 1132 TGATGACGCCGACCTCGTAGTTGGCCTGC-TGCCGGTACTTCTCGGTGAC---GCCGTCG 1077 Query 41067 GGGTACCGACGACGCGCGCCTCGGGCGACCTCGTCCTCGAACCAGGTGATCTCCGTGTGC 41126 ||| |||| || || || ||||||| | | ||||| ||| || | | Sbjct 1076 GGGAACCGCATGTGCAGTCCCCGCTCGACCTCCTTGATCAGCCAGGACTCCTCGGTCTCC 1017 Query 41127 CCCTCGGGCACCGGGAACTTCGGCATCAGGTTCT----CGTGCTCGAACATGCCGGTGGT 41182 |||||||| || || ||| ||| |||| || ||| | ||| | || || | Sbjct 1016 CCCTCGGGGACGGGCGCCTTGGGCTGGAGGTCCTGGCCGGTGGT-GAA---GTCGATGTT 961 Query 41183 GTCGACCATCTCGGCGATGTCCAGCGTGGT-CCGCATCCCCCACTCCCAGATGGGAGAGG 41241 | | |||||||| | ||||||| | |||| || | ||| || Sbjct 960 GCAG---CGCTCGGCGACGAGCAGCGTGTTGTCGCAGGCCTC-GGGGTGGATCGGGTCCC 905 Query 41242 AGTCGATGGCCGCCATCTCGGCGGCCGACTTCAGGTAGTA-CCCGGAGCCCTCGAAGCGG 41300 || | |||| |||||||||||| ||||| |||||| | || | | | ||||| | Sbjct 904 AG-AGCTGGC--GCATCTCGGCGGCGGACTTGAGGTAGAAGTCCTGCG-CGTCGAACTTG 849 Query 41301 AAGCGGTGAGGGTTATCGAGCGTGGTGCCGGTCTGGACGCACAGCAGTGCATCGTGAGCG 41360 || |||| |||| |||| || ||||||||||||||||||| || | ||||| || Sbjct 848 AACCGGTTCGGGTCCGCGAGGGTCTTGCCGGTCTGGACGCACAGGAGCACCTCGTGCGCC 789 Query 41361 ACCGACTCCTCGGCGGTGACGTAGTGGGAATCGTTCGTGACCA--CCGGAGTGAGCGCGA 41418 | || || | | | |||||| |||||||| | | ||| | || ||| Sbjct 788 TTGGTGTCGTCCGGGTAGGTGTAGTGCAGGTCGTTCGTCGCGAGGCCG--GGCAGGTCGA 731 Query 41419 GGTGCTTCCCGAGCCGGTACAGATCCTCGCGGACCCGGCGCTCGATCTCGATGCCGTGGT 41478 | | | | ||||||| |||| ||||| ||||||| |||||||||||||||||||| Sbjct 730 GCTTGTCCTTGAGCCGGAACAGGTCCTCCTGGACCCGCTTCTCGATCTCGATGCCGTGGT 671 Query 41479 CCATCAGCTCCAGGAAGTACCGGTCACGCCCGAAGACCTCCAGGTACCGACCGGCCTCCT 41538 ||||||||||||||||| | ||| |||||||| || |||| | || ||| Sbjct 670 CCATCAGCTCCAGGAAGAAGTTGTCCTTCCCGAAGATGTCGCGGTAGTCGCTCGCGGCCT 611 Query 41539 TCACGGCCTCGTCGTACTGCCCGAGGTTC---AGCCGGGTCATGATCGCACCGCCAGGAC 41595 |||| ||||| | | || | | | ||| || | || | | ||| || | Sbjct 610 GGCAGGCCGCGTCGAAGT---CGTGCTGCTGGAGCAGGCGCGCGACCTCGCCGGACGGGC 554 Query 41596 ATCCGGTCGTGACGACCAGGCCCTCGTTGTGCTCGGCGACCAGGTCGAAGTCCATGCGCG 41655 | || ||||| ||| |||||||| | || || | | ||| ||| |||||| |||| Sbjct 553 AGCCCGTCGTCGCGATCAGGCCCTTGCCGTACTTCTCCAGCAGCTCGCGGTCCATACGCG 494 Query 41656 GGTACTTCCCG-AGCAGGCCCTCCTGGTACGACCGCGAGCTGAGCTTCATGAGGTTGTGC 41714 | ||| | || | |||||| || | | ||||| |||| | |||||||||| Sbjct 493 G---CTTGTAGTAGTA-GCCCTCGAGGCTGGCCAGCGAGGAGAGCCGGAAGAGGTTGTGC 438 Query 41715 AGGCCGGTCTTGTTCGTGGAGAGGATCGTGAGGTGCGTGTACGCACCCCGACCGCTCACG 41774 | || | ||||| | ||| | ||| | ||| |||||| | | | Sbjct 437 ATCCCCTCCGTGTTCTCCGCGAGCAGCGTCATGTGGGTGTAC------------ATGAGG 390 Query 41775 TCGTACCGCTTCTGGTCTTCCG-TGCCCCACTGGACTCGCTCCTGGTCGAAGCGGGAGTC 41833 ||| |||| | || ||| ||||| | | |||| | ||| || || | Sbjct 389 TCGGGGTTGTTCTCG-CTGCCGTTGCCCAGCGCGGTGCGCTTGCGCTCGTGCCGCGACCC 331 Query 41834 CGGGGCCATGTACGCCTCGATGCCGATGATCGGCTTGACCCCAGCGGCCTGCGCCGAGGT 41893 || || | ||| |||| |||||||||||||||||||| | |||| |||| | Sbjct 330 GGGCGCGAGGTAGCCCTCCATGCCGATGATCGGCTTGACGTCGTGCGCCTTCGCCTTGCG 271 Query 41894 GAAGAAGTCGTACGCACCGTGAAGGTTGCCGTGGTCCGTCACTGCGACGGCAGGAGCACC 41953 |||| ||| | || |||| | |||||||||||| |||| |||| ||| || | Sbjct 270 CCAGAACTCGAAGGCGCCGTAGACGTTGCCGTGGTCGGTCATCGCGATGGCCGGCATCTC 211 Query 41954 CTGGCGGGCGACCTCGGCGACCATCTGCTTCATCCGAGCGGCCCCGTCGAGGAGGCTGTA 42013 || |||| |||||| || || | | | ||| ||||| ||||| || | | | Sbjct 210 GTGCTTGGCGGCCTCGGAGAACAGGTCGTCGAGCCGGGCGGCACCGTCCAGCATCGAGAA 151 Query 42014 CTCGGAGTGGTTGTGCAGGTGGACGAAG 42041 ||||| ||| ||||||| || |||||| Sbjct 150 CTCGGTGTGCGTGTGCAGATGAACGAAG 123 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 164836701690116