Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marchantia_20polymorpha_20subsp._20ruderalis_20[genbank_20GCA_5F0016 41455.1_202016-05-10] 4,137 sequences; 205,718,403 total letters Query= NC_021307.1 Length=49894 Score E Sequences producing significant alignments: (Bits) Value seq2905 80.6 9e-11 >seq2905 Length=1000 Score = 80.6 bits (88), Expect = 9e-11 Identities = 91/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 31440 CGTGCTCCAGCACCGACTCGTGACCGACCTCCAGGATGTGCGCCAGGTAGTCCTCGTTCT 31499 ||||||| ||||| || ||| ||||||||||||||||| | ||| |||||||| Sbjct 579 CGTGCTCGAGCACGGAGAGGTGCCCGACCTCCAGGATGTGGCGGATGTACCCCTCGTTCG 638 Query 31500 CGGCCGTGGCCGGATTCGGACGGTGGAACGACCGGTAGCAGTTCCGGCCCGCGAACTCCG 31559 ||||| ||| ||||| || ||||| |||||||| ||||| |||||||||| Sbjct 639 TCGCCGTCTTCGGGTTCGGCTTGTTCCACGACTGGTAGCAGGCGCGGCCGGCGAACTCCG 698 Query 31560 CG 31561 || Sbjct 699 CG 700 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 159531362337664