Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marchantia_20polymorpha_20subsp._20ruderalis_20[genbank_20GCA_5F0016 41455.1_202016-05-10] 4,137 sequences; 205,718,403 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq2642 116 1e-20 seq3406 96.9 1e-14 >seq2642 Length=355452 Score = 116 bits (128), Expect = 1e-20 Identities = 235/343 (69%), Gaps = 8/343 (2%) Strand=Plus/Minus Query 302539 TTTCTTACGGTCATATCATAACCAATCATAATGTCTTCCATACTCTTGATTAAACGACGC 302598 || ||||| || |||||| | ||| | || |||||| ||| | | || | | Sbjct 226402 TTCCTTACTGTACCATCATACTTGACCATGACATCCTCCATAGCCTTCACAAGTCGCCTC 226343 Query 302599 TGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACCC 302658 || || || || || ||||| || ||||| ||||| || ||||| | | || ||| Sbjct 226342 TGGATGTATCCTGTCTCTGATGTCTTCACAGCAGTATCGATGAGACCTTCCCTTCCTCCC 226283 Query 302659 ATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCAACGAAA 302718 ||||| |||||||| | ||||| |||| ||||| | || | || | || || ||| Sbjct 226282 ATAGCGTGGAAGAAGAACTCTTGCGGTGTAAGCCCTCTAAGGTATGAATTTTCCACAAAA 226223 Query 302719 CCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTCTCAT-- 302776 ||||| ||||||| || ||| ||| || || || || || || | | || || Sbjct 226222 CCACGACTCTCGGGCCCATAGTCATCCTTCGTGAAATGAGGTAGCGTAC-GATCG-ATGA 226165 Query 302777 AGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAATCATCTGCG 302836 | || || || ||||||||||| || || || ||||| |||| || | ||||||||| | Sbjct 226164 ACCCATAAGGTATACGCTTTCCTTCGACATTTTGCTGACCCACACAAGCAATCATCTGAG 226105 Query 302837 AAATATT--TAAATCACTGCCCTTGGAGCCAGCATTTACCATA 302877 | ||||| | || | ||||||||| ||||| | |||||| Sbjct 226104 ATATATTGATGAAGGA--GCCCTTGGAACCAGCCGTAACCATA 226064 >seq3406 Length=190355 Score = 96.9 bits (106), Expect = 1e-14 Identities = 164/238 (69%), Gaps = 0/238 (0%) Strand=Plus/Plus Query 251403 GGCGATAAGACCACACTTATTACACACATGGACGCTGTAAGCATCAGATGCGTCATATAG 251462 ||| | ||||||||| | | |||||| || || | ||| |||||| || | || Sbjct 84853 GGCCACAAGACCACATATCTCACACACGTGCACCCGGTAGGCATCACTCTGATCGAAGAG 84912 Query 251463 CCGACCCTTGGTGAAGCGAGATGCACCGTGTGAAATCATACAATCACGCTCCATTTCACC 251522 || | || ||| | | || || || | |||||||||||| |||||||| || || Sbjct 84913 ACGCTCTTTCAAGAAATGCGCAGCTCCATGGGCAATCATACAATCTCGCTCCATCTCTCC 84972 Query 251523 GAAACGAAGACCACCATCGCGAGCCCTACCCTCGGCAGGCTGACGAGTGAGATTAACCAT 251582 || |||||||| ||||| |||| | |||||| ||||| || || || ||| | || Sbjct 84973 AAATCGAAGACCTCCATCACGAGAACGACCCTCAGCAGGTTGCCGTGTAAGAATTTGCAC 85032 Query 251583 AGGACCGATGGAGCGGCTATGTTGCTTATCATTTACCATATGCTTGAGACGCTGGTAG 251640 ||| || | || ||| ||||||| ||||||||||| | |||||||||| Sbjct 85033 AGGTCCTCTACCACGTGAATGAATTTTATCATCCACCATATGCTTCAAACGCTGGTAG 85090 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471739585848169