Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marchantia_20polymorpha_20subsp._20ruderalis_20[genbank_20GCA_5F0016 41455.1_202016-05-10] 4,137 sequences; 205,718,403 total letters Query= NC_021323.1 Length=45572 Score E Sequences producing significant alignments: (Bits) Value seq899 82.4 2e-11 >seq899 Length=1674 Score = 82.4 bits (90), Expect = 2e-11 Identities = 166/248 (67%), Gaps = 9/248 (4%) Strand=Plus/Plus Query 10289 GATTTTTCTGCAATAGAGGCAAGAGTCATAGCATGGTATGCAAAAGAACAATGGCGTTTA 10348 || || ||||| || ||||| | || || || ||| || | || | ||||| | Sbjct 405 GACTTCTCTGCCATTGAGGCCCGCGTGATTGCCTGGCTGGCTCAGGAGCTTTGGCGCCTG 464 Query 10349 GATGTGTTCAACACACACGGAAAGATATATGAAGCATCGGCTTCTCAAATGTTTAATGTA 10408 || ||||| || ||||| |||||||| || || || || |||||||||||| || Sbjct 465 GAGGTGTTTGCAACCCACGGCAAGATATACGAGGCGTCTGCATCTCAAATGTTTGGCGTG 524 Query 10409 CCGGTAGAAAGCATAACTAAAGGCGACCC---------TCTCAGACAAAAAGGAAAAGTG 10459 ||| | || | || | |||||| |||| ||||| ||||| || ||||| Sbjct 525 CCGCTTGAGCGGATTAAGAAAGGCAACCCGGAATATGAGCTCAGGCAAAAGGGCAAAGTC 584 Query 10460 TCCGAATTAGCTTTAGGCTATCAAGGTGGCGCTGGAGCTTTAAAAGCAATGGGTGCATTG 10519 | || | || || ||||| ||||| || | || ||||| | |||||||| || | Sbjct 585 GCGGAGCTGGCCTTGGGCTACCAAGGGGGATCGGGCGCTTTGATTGCAATGGGAGCCCTT 644 Query 10520 GAAATGGG 10527 || ||||| Sbjct 645 GACATGGG 652 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 145701641781996