Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marchantia_20polymorpha_20subsp._20ruderalis_20[genbank_20GCA_5F0016 41455.1_202016-05-10] 4,137 sequences; 205,718,403 total letters Query= NC_021339.1 Length=51077 Score E Sequences producing significant alignments: (Bits) Value seq1013 859 0.0 >seq1013 Length=3715 Score = 859 bits (952), Expect = 0.0 Identities = 1717/2502 (69%), Gaps = 94/2502 (4%) Strand=Plus/Minus Query 38759 CAGACCCTTGCGGGTTGCCCCGGTCGAGTCGAAGGCACCGGCCTTGATCAGGGACTCGAT 38818 ||| |||||||||| ||| ||||||||| || || ||||||||||| ||||||| Sbjct 2847 CAGGCCCTTGCGGGAGTGGCCGAGCGAGTCGAACGCGCCCGCCTTGATCAGCGACTCGAC 2788 Query 38819 GGCTCGCTTGCTCACCGTCGCCTGAGTCGCTGCCTT---CAGGAAGTCCGGCAGGGAGGT 38875 | | |||| | | | || | | |||| |||| ||||||||| | | | | Sbjct 2787 GACCTTCTTGTTG-CAGACGACCGCGTCGA--CCTTGCGCAGGAAGTCGGAGAAGTCGAC 2731 Query 38876 GAACTTCCCCCAGGCTTCCCGGAGTTCAGCGATCTCCGCGACCATGCCCTCG---CCCAC 38932 ||| |||||| ||||| | | |||| |||| | | | | | | || || Sbjct 2730 GAAGTTCCCCTTC---TCCCGCCGCGCGGCGACGATCGCGTCGACGACGTTGTGCCCGAC 2674 Query 38933 GTTCTTCACGGCGGTCAGTCCGAAGCGGATCTCGTGCTCCCCGTTGGGGGTGAACGAGCT 38992 ||| | | || || ||||| ||||| |||| | ||| || | ||| || Sbjct 2673 GTTGCGGATGCCGCCGAGGCCGAAACGGATGTCGT---CGCCGACCGGCGCGAAGTTGCG 2617 Query 38993 GTTCGAGACCGACACGTCGGGCGGCAGGACCCGAAGGCCCATGCGCCGTGCCTCGCCGAG 39052 |||| | ||||||||||| |||||| | |||||| || || ||| | || Sbjct 2616 CACCGAGTCGTTGACGTCGGGCGGGAGGACCGTGATGCCCATCCGGCGGCACTCCGCCAG 2557 Query 39053 GTA---CGTGGCCATCTTGTTCTTGTCGTCGCCCACCGAGGTGAGCGCAGCCGCCATGTA 39109 ||| || |||| |||| ||||||||||| ||||||||||||| | | |||||||| Sbjct 2556 GTAGACCGCGGCC---TTGTCCTTGTCGTCGCGCACCGAGGTGAGCACGCCGGCCATGTA 2500 Query 39110 CTCGGCCGGGTAGTGCGTCTTCAACCACGCCGTGCGGTACGCGATGAGTCCGTACGCCGC 39169 |||||||||||||| || ||| | | ||||| | ||||| | | ||||| || || Sbjct 2499 CTCGGCCGGGTAGTTCGCCTTGAGGTAGGCCGTCCAGTACGACACCACGCCGTAGGCGGC 2440 Query 39170 CGAGTGCGCCTTGTTGAAGGCGTAGCCAGCGAAGGGGACCAGCACGTCCCACACTGCCTG 39229 ||||| || ||||||||||||| | | ||| |||| ||| | |||||| | | || Sbjct 2439 GGAGTGGGCGCGGTTGAAGGCGTAGTCGGAGAACGGGAGCAGGATGTCCCAGAGAGTCTT 2380 Query 39230 GATGGCACCGTCCGAGTAGCCTCGCTCGCGCGCTCCCTTCTGGAAGTTCACGAACTCCTT 39289 || || | | |||||||| || | |||| |||| || ||||||| Sbjct 2379 GACCGCGGCCGCGGAGTAGCCGTTGTCCTTCATGCCCTGGGCGAAGCCGGCGTACTCCTT 2320 Query 39290 GGCCAGAACCTCGGGCTTCTTCTTGCCCATCGCCCGGCGAAGCAGGTCGGCCTGACCCAG 39349 | |||| | ||| |||||||||||||||||| ||||| |||||||| ||||| || || Sbjct 2319 GTCCAGGATCTCCTTCTTCTTCTTGCCCATCGCGCGGCGGAGCAGGTCCGCCTGGCCGAG 2260 Query 39350 GGTGTACCCGGCCATGACCTGTGCAACCTTCTGCACCTGCTCCTGGTAGATGATCAACTG 39409 ||||| || |||| ||||| || | | ||||| |||||||| | ||||| Sbjct 2259 CGTGTAGCCCGCCAGCACCTGCGCGATGGACATGACCTGTTCCTGGTACACGATCAGGCC 2200 Query 39410 GAATGTCGGGTCCAGGATCTCCGACAGGGACTCGGCCACCTCGGGGTGGATCGGCGTGAT 39469 ||| ||| | |||| ||| || | |||||||| ||| ||||||||||||||||| Sbjct 2199 GAAGGTCTCACCGAGGACGTCCTTGAGCGGCTCGGCCAGCTCCGGGTGGATCGGCGTGAT 2140 Query 39470 CGCCTGCTGCCCGTTCTTCCGGAGGGCGTAGTTCGTGTGAGACCCCACGCCCATCGGACC 39529 | ||||| | |||||||| ||| |||||||| |||| | | | |||||||| || Sbjct 2139 CTCCTGCCGGCCGTTCTTGCGGTCGGCGTAGTCGTTGTGCGCGTTCGCCCCCATCGGGCC 2080 Query 39530 CGGACGGTACAGCGCGACGACGGCTGAGATGTCCTCGAAGTTGTCCGGCTTCAGCAGGCG 39589 ||| |||||||||||| |||| || ||||||| |||||| | | ||| || |||| Sbjct 2079 CGGGCGGTACAGCGCGCCGACCGCGGAGATGTGCTCGAACTCGCTGGGCGCCATGCGGCG 2020 Query 39590 GAGCAGTGAGCGCATCGCGCCGCCGTCGAGCTGGAAGACCGAGAGCGTGTCGCCCCTGGC 39649 ||||| ||||||| |||||||||||||||||| || || ||||| || | || Sbjct 2019 CAGCAGATCCCGCATCGGGCCGCCGTCGAGCTGGAACACACCCAGGGTGTCCCCGCGGGA 1960 Query 39650 CAGCAGCTCGTAGGTCGGGGCGTCGTCCAGAGGGATGTTCTCCAGGTCGA---CGTGCTC 39706 ||||||||||||||| |||||| || || | |||||||||| || ||| Sbjct 1959 GAGCAGCTCGTAGGTCTTCCGGTCGTCGAGCTCGACCTCGTCCAGGTCGACGGCGGGCTT 1900 Query 39707 CCCACGGTTGAGGCGGATGTTCTCGACCGCGTCGCCCATGATCGTGAGGTTCCGGAGCCC 39766 || |||||| ||||||||| | |||||| | | ||| |||||||| || ||||| Sbjct 1899 GCC---GTTGAGCTCGATGTTCTCCAGGGCGTCGTCGAGGATGGTGAGGTTGCGCAGCCC 1843 Query 39767 GAGGAAGTCCATCTTCAGCAGGCCCAGAGCCTCGCAG-CTCGGGTAGTCGAACTGCGTGA 39825 ||||||||||||||||||||||| | | ||||||| | | | |||||||||||||| Sbjct 1842 CAGGAAGTCCATCTTCAGCAGGCCGATGGTCTCGCAGACGCCCAT-GTCGAACTGCGTGA 1784 Query 39826 TCGTCGCGCCGTC---CT-GCGGCCGAACCCACACCGGGATGTGGTCGACCAGAGGC-TC 39880 | |||||||||| || ||||| | | |||||| ||||| || ||| || Sbjct 1783 TGATCGCGCCGTCGGACTCGCGGC----GCTGGATCGGGATCACGTCGATCAACGGCGTC 1728 Query 39881 GTCGGACATGATCACACCGGCTGCGTGCACACCCATCTGCCGGACGAGACCTTCGAGACC 39940 | |||||||||||| || || |||||||||||| |||||| || || ||||| || Sbjct 1727 G-AGGACATGATCACGCCCGCGGCGTGCACACCCCACTGCCGCTTCAGTCCCTCGAGGCC 1669 Query 39941 GAGCGCGGTGTCGATGACCTCCTTGGCGTCCGGGTCGGAGCCGTAGATGCCCCGGATCTC 40000 |||||||||||| || ||||||| | | |||||| | |||||| | | |||| ||| Sbjct 1668 CCGCGCGGTGTCGACGATCTCCTTGACCTGCGGGTCCGCCTCGTAGAGGGCGCGGACCTC 1609 Query 40001 GGCGGCCTCCTCGTACCGAGGGTGCTCGGCGTTGAAGATGCCTTCGAGGGGCATCGAGTT 40060 || ||||| |||||| |||| | || ||||||||| || || || || Sbjct 1608 GGTCGCCTCGGAGTACCGCTTGTGCGACGGGTCGAAGATGCCCGACAGCGGGATGTCCTT 1549 Query 40061 GCCCATCACGTCGGCCGGGTACGCCTTGGTCAGCTTC--TCGCCGAC---CTGGAAGGGC 40115 ||||||||| ||| ||| ||||||| || | | ||| |||| | | |||| Sbjct 1548 GCCCATCACCGCGGGCGGCATGGCCTTGG--AGATGCGGTCGGCGACGGAGTAGCCGGGC 1491 Query 40116 TTGTCG---AGCACGCGAGCCGCGTCCTTCATCGCGTTGCGCGCCTTGATCCGTC-CGTA 40171 | | || ||||| || |||| |||||| |||||| ||||||||| |||| ||| Sbjct 1490 TGGCCGAACAGCACCCGCGCCGAGTCCTTGATCGCGGCCTTCGCCTTGAT-CGTCGAGTA 1432 Query 40172 CGTCGCGATCTGCGCGACCTTGTCGGCCCCGTACTTCCGGGTGACGTACTGGATGACCTC 40231 || ||||||||||| | ||| | ||||||||| ||||||||| |||| | ||| Sbjct 1431 GGTGATGATCTGCGCGATCCGGTCCTCGCCGTACTTCTCGGTGACGTAGCGGATCATCTC 1372 Query 40232 GCCACGACGCCGGTCATCGAAGTCGATGTCGACATCGGGCATGGACACGCGCTCGGGGTT 40291 ||| || ||||| || |||||||| ||||||| |||||||| ||||| || || ||||| Sbjct 1371 GCCGCGCCGCCGCTCGTCGAAGTCCATGTCGATGTCGGGCATCGACACACGGTCCGGGTT 1312 Query 40292 CAGGAAGCGCTCGAAGATGAGCCCGTGCTCCAGCGGGTCGAGGTCGGTGATCCCGAGGAC 40351 |||||| ||||||||||| ||| |||| | |||||||||||||||||| || ||||| Sbjct 1311 CAGGAACCGCTCGAAGATCAGCTTGTGCCGGATCGGGTCGAGGTCGGTGATGCCCAGGAC 1252 Query 40352 GTAGGCGACCAGCGAACCGGCCGCAGAGCCCCGCCCAGGGCCGACCCAGACCCCGTTCTC 40411 ||||||||||||||| || ||||| ||||| || || |||||| | || ||| | Sbjct 1251 GTAGGCGACCAGCGAGCCCGCCGCCGAGCCACGGCCGGGGCCGCAGCGGATGCCGACCGA 1192 Query 40412 CTTCGCCCAGCGGATGAAGTCCGCGACGACGAGGAAGTACGACGGGAACCCCATCTGGAT 40471 ||| || |||||| ||||||| || |||||||| ||| | ||||||| ||| Sbjct 1191 CTTGGCGTGCTGGATGAGGTCCGCGGTCACCAGGAAGTAGCCGGGGTAGCCCATCTTGAT 1132 Query 40472 GATCATGTCGATCTCGTACTGGAGCTGCTTGCCG----TGCTCGTAGTCCGTGCCGTTCG 40527 ||| | | ||| |||||| | | |||| ||||| | |||| | | ||||| | Sbjct 1131 GATGACGCCGACCTCGTAGTTGGCCTGC-TGCCGGTACTTCTCGGTGAC---GCCGTCGG 1076 Query 40528 GGTACCGACGACGGGCA--CCTCGATGGACCTCGTCCTCGAACCAGGTGATCTCCGTGTG 40585 || |||| | | ||| || || | |||||| | | ||||| ||| || | Sbjct 1075 GGAACCG--CATGTGCAGTCCCCGCTCGACCTCCTTGATCAGCCAGGACTCCTCGGTCTC 1018 Query 40586 CCCCTCGGGCACCGGGAACTTCGGCATCAGGTTCT----CGTGCTCGAACATGCCCGTGG 40641 ||||||||| || || ||| ||| |||| || ||| | ||| | | | Sbjct 1017 CCCCTCGGGGACGGGCGCCTTGGGCTGGAGGTCCTGGCCGGTGGT-GAA---GTC---GA 965 Query 40642 TGTCGACCATCTCGGCGATCTCCAGCGTGGTCT-TCATGCCCCACTGCCAGATCGG--CG 40698 ||| | |||||||| ||||||| | | || ||| | | |||||| | Sbjct 964 TGTTGCAGCGCTCGGCGACGAGCAGCGTGTTGTCGCAGGCCTC-GGGGTGGATCGGGTCC 906 Query 40699 AAGAGTCGATCGCCGCCATCTCTTCGGCGGACTTCAGGTAGTA-CCCGGAGCCCTCGAAG 40757 ||| | | || |||||| |||||||||| |||||| | || | | | ||||| Sbjct 905 CAGA---GCTGGC--GCATCTCGGCGGCGGACTTGAGGTAGAAGTCCTGCG-CGTCGAAC 852 Query 40758 CGGAAGCGGTTCGGGTTGTCGAGCGTGGTGCCGGTCTGGACGCACAGCAGTGCATCGTGA 40817 ||| |||||||||| |||| || ||||||||||||||||||| || | ||||| Sbjct 851 TTGAACCGGTTCGGGTCCGCGAGGGTCTTGCCGGTCTGGACGCACAGGAGCACCTCGTGC 792 Query 40818 GCGACCGACTCCTCGGCGGTGACGTAGTGGGAATCGTTCGTGACCA--CCGGAGTGAGCG 40875 || | || || | | | |||||| |||||||| | | ||| | || Sbjct 791 GCCTTGGTGTCGTCCGGGTAGGTGTAGTGCAGGTCGTTCGTCGCGAGGCCG--GGCAGGT 734 Query 40876 CGAGGTGCTTCCCGAGCCGGTACAGGTCGTCACGGACCCGGCGCTCGATCTCGATGTCGT 40935 |||| | | | ||||||| ||||||| || ||||||| ||||||||||||| ||| Sbjct 733 CGAGCTTGTCCTTGAGCCGGAACAGGTCCTCCTGGACCCGCTTCTCGATCTCGATGCCGT 674 Query 40936 GGTCCATGAGTTCGAGCAGGTACCGGTCACGCCCGAAGACCTCCAGGTACCGACCAGCCT 40995 ||||||| || || || | | | ||| |||||||| || |||| | || Sbjct 673 GGTCCATCAGCTCCAGGAAGAAGTTGTCCTTCCCGAAGATGTCGCGGTAGTCGCTCGCGG 614 Query 40996 CCTTCACGGCCTCGTCGTACTGCCCGAGGTTGAGCCGGGTCATGATCGCACCGCCAGGGC 41055 ||| |||| ||||| | | | | |||| || | || | | ||| |||| Sbjct 613 CCTGGCAGGCCGCGTCGAAGTCGTGCTGCTGGAGCAGGCGCGCGACCTCGCCGGACGGGC 554 Query 41056 AGCCAGTCGTGACGACCAGGCCCTCGTTGTGCTCGGCGACCAGCTCGAAGTCCATGCGCG 41115 |||| ||||| ||| |||||||| | || || | | ||||||| |||||| |||| Sbjct 553 AGCCCGTCGTCGCGATCAGGCCCTTGCCGTACTTCTCCAGCAGCTCGCGGTCCATACGCG 494 Query 41116 GGTACTTCCCG-AGCAGGCCCTCCTGGTACGACCGAGAGCTGAGCTTCATGAGGTTGTGG 41174 | ||| | || | |||||| || | | | ||| |||| | ||||||||| Sbjct 493 G---CTTGTAGTAGTA-GCCCTCGAGGCTGGCCAGCGAGGAGAGCCGGAAGAGGTTGTGC 438 Query 41175 AGCCCGGTCTTGTTCGTGGAGAGGATCGTGAGGTGCGTGTAC 41216 | ||| | ||||| | ||| | ||| | ||| |||||| Sbjct 437 ATCCCCTCCGTGTTCTCCGCGAGCAGCGTCATGTGGGTGTAC 396 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 163316776362966