Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marchantia_20polymorpha_20subsp._20ruderalis_20[genbank_20GCA_5F0016 41455.1_202016-05-10] 4,137 sequences; 205,718,403 total letters Query= NC_021347.1 Length=142563 Score E Sequences producing significant alignments: (Bits) Value seq1013 114 1e-20 seq2905 84.2 2e-11 >seq1013 Length=3715 Score = 114 bits (126), Expect = 1e-20 Identities = 202/294 (69%), Gaps = 3/294 (1%) Strand=Plus/Plus Query 105009 GAGGTCCGCACCATCACCAGCAAGAACTTCGCCGGGTACTTCAACGTCGTCGCCGACTAC 105068 |||||| || ||||| || | | || | |||| |||||| || ||| ||| | Sbjct 1117 GAGGTCGGCGTCATCATCAAGATGGGCTACCCCGGCTACTTCCTGGTGACCGCGGACCTC 1176 Query 105069 ACCAAGTGGGCTAAG---GACCGCATGCTCGTCGGTCCCGGCCGTGGTTCGGCCGGTGGC 105125 | | || || ||| | | |||| | | ||| ||||||||||| ||||| | ||| Sbjct 1177 ATCCAGCACGCCAAGTCGGTCGGCATCCGCTGCGGCCCCGGCCGTGGCTCGGCGGCGGGC 1236 Query 105126 TCGCTCGTCTCGTACCTGATGGACATCACCGAGCTCGACCCGATCAAGTACGACCTGATG 105185 ||||| ||| | ||| | ||| ||||||||| |||||||||||| | || | ||||| Sbjct 1237 TCGCTGGTCGCCTACGTCCTGGGCATCACCGACCTCGACCCGATCCGGCACAAGCTGATC 1296 Query 105186 TTCGAGCGGTTCATCTCGCCGGAGCGGAAGAACTTCCCCGACATCGATCTCGACTTCCCG 105245 |||||||||||| | ||||| || | | ||||||||||| | |||||| Sbjct 1297 TTCGAGCGGTTCCTGAACCCGGACCGTGTGTCGATGCCCGACATCGACATGGACTTCGAC 1356 Query 105246 CAGAAGCGTCGCGGCGAGGTCGTCGACTACATCGCCGACCGCTACGGCCACGAC 105299 || ||| ||||||||| | || |||| || |||| |||||| | ||| Sbjct 1357 GAGCGGCGGCGCGGCGAGATGATCCGCTACGTCACCGAGAAGTACGGCGAGGAC 1410 >seq2905 Length=1000 Score = 84.2 bits (92), Expect = 2e-11 Identities = 343/531 (65%), Gaps = 50/531 (9%) Strand=Plus/Minus Query 25670 GAGTTCGCCGGTCGCGCGTGCTACCAGTCGTTCCACCGGCCGAACCCGAAGACGGCAACG 25729 ||||||||||| ||||| ||||||||||||| || |||||||||||||||||| ||| Sbjct 696 GAGTTCGCCGGCCGCGCCTGCTACCAGTCGTGGAACAAGCCGAACCCGAAGACGGCGACG 637 Query 25730 AACCGCACGTACCTGGCCAACACGC---AGCGCCAGCGCCACGGGTCGATCGAGGAGCAC 25786 ||| |||| | | ||| | || | || || | | ||||| ||| Sbjct 636 AACGAGGGGTACATCCGCCACATCCTGGAGGTCGGGCACCTCTCCGTGCTCGAG---CAC 580 Query 25787 GCGTCGGTGAGCTTCTGGTTCACCGGTCTGTCGCGCACCTGCTCGCACGAGGTCGTCCGG 25846 | || || | ||| | ||||| |||| || || | |||||| || ||||| Sbjct 579 GGCTCCGTCTCCGTCTACGTGACCGGCGTGTCCCGGTCCCTGACCCACGAGATCATCCGG 520 Query 25847 CACCG---GCACTTCTCGTACAGCCAGCTGTCCCAGCGGTACGTC---GACAGCAACGGG 25900 ||||| || | | ||| |||||||| ||||| |||||| || ||| ||| Sbjct 519 CACCGCGGGCTCAGCCCGTCG---CAGCTGTCGCAGCGCTACGTCCCGGAGAGCGACG-- 465 Query 25901 GCCGCGATCGTGCTGCC---CCCGGCCGTCGTCCAGCTGGGCCTGGCCCACCTGTTCGAC 25957 ||||| ||||| |||| | | || || | | || || || ||||||| Sbjct 464 -CCGCGTTCGTGATGCCGGACGTGATCGCCGACGACGAGGAGATGTCCGCGACGTTCGAC 406 Query 25958 GAGGTCGA---CGACGCG-----GT-----GAGCGACGCCT--ACTCGGTCATCCAGAAG 26002 |||| | || |||| || ||||||| ||| || ||| | |||| Sbjct 405 GAGGCCATGCTCGCCGCGTCCGTGTACTACGAGCGACTCCTCGACCTCCTCACCGCGAAG 346 Query 26003 ----GCGCTCA-TCGACGCGGGCCTGAAGAAGAAGCAGGCCAACCAGGCGGCCCGCGCCG 26057 |||| | || || ||| ||||||| ||| |||||||||||| | Sbjct 345 TACGGCGCGAACTCCACCGCGGC-----GAAGAAGGTCGCCCGGCAGGCGGCCCGCTCGA 291 Query 26058 TCCTCATGGGCGCGACCGAGACCCGCATGGTGATGACCGGCAACTACCGGGCGTGGAAGG 26117 |||| | ||| ||||||||||| || ||| | ||||| |||||||| | ||| | Sbjct 290 TCCTGCCGAACGCCACCGAGACCCGGATCGTGCTCACCGGGAACTACCGCACCTGGCGGC 231 Query 26118 GCTTCCTCA--CGCAGCGCGACTCGGAGGCCGCCGACCCGGAGATCCGCGC 26166 |||||| | | | ||||||| | | ||||| |||| |||||||||||| Sbjct 230 ACTTCCTGAACCTCCGCGCGACCCCG--GCCGCTGACCGGGAGATCCGCGC 182 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 456050015293960