Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marchantia_20polymorpha_20subsp._20ruderalis_20[genbank_20GCA_5F0016 41455.1_202016-05-10] 4,137 sequences; 205,718,403 total letters Query= NC_021530.1 Length=171407 Score E Sequences producing significant alignments: (Bits) Value seq2878 246 3e-60 seq467 147 2e-30 seq3792 136 4e-27 seq3282 118 1e-21 seq1308 113 5e-20 seq164 104 3e-17 seq3761 95.1 1e-14 seq595 91.5 2e-13 seq1921 84.2 2e-11 seq470 82.4 8e-11 >seq2878 Length=397857 Score = 246 bits (272), Expect = 3e-60 Identities = 359/505 (71%), Gaps = 2/505 (0%) Strand=Plus/Plus Query 159464 TAACTTTCTCACAGCAGCTGTCTCGACGCCTGCTGACGCTATGGGTCATTCTCTTCTTCT 159523 ||| ||| | || || ||||| || || || || | | | | ||||||| | || | Sbjct 140288 TAATTTTTTAACTGCCGCTGTTTCTACTCCAGCAAATAGTTTAGCTCATTCTTTACTATT 140347 Query 159524 ACTTTGGGGTCCTGAGTCTCAGGGGAATTTCCAGCGGTGGTGCCAACTTGGGGGATTATG 159583 | | ||||| ||||| | || || |||| || ||||||||| | || || ||||| Sbjct 140348 ATTATGGGGACCTGAAGCACAAGGTGATTTTACTCGTTGGTGCCAATTAGGTGGTTTATG 140407 Query 159584 GAATTTTGTGGCACTCCACGGTGCCTTCGCCCTAATTGGTTTCATGCTCCGTCAGTTTGA 159643 || |||||| || || || ||||| || ||| |||| || || ||| | || || ||||| Sbjct 140408 GACTTTTGTAGCTCTTCATGGTGCATTTGCCTTAATAGGCTTTATGTTACGACAATTTGA 140467 Query 159644 ACTGGCACG-TCTCATTGGTATCCGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATTG 159702 ||| || | ||| | | | |||||||| ||||| |||||||| ||||| ||||||| Sbjct 140468 ACTTGCTAGATCTGTTCAAT-TACGTCCTTATAATGCAATTGCGTTTTCTGGACCTATTG 140526 Query 159703 CTGTTTTTGTCAGCGTCTTCCTCATCTACCCATTGGGTCAGTCCAGTTGGTTTTTCGCTC 159762 |||||||||| || || || || || || || || || || |||||||||| || | Sbjct 140527 CTGTTTTTGTATCTGTTTTTCTTATTTATCCTTTAGGACAATCAGGTTGGTTTTTTGCAC 140586 Query 159763 CGTCCTTTGGGGTGGCAGCAATCTTTAGATTCCTGTTGTTCCTTCAAGGATTTCACAACT 159822 | ||||| || || ||||| |||||||| | | || ||||||| ||||| |||| Sbjct 140587 CTAGTTTTGGTGTAGCTGCAATTTTTAGATTTATTCTTTTTTTTCAAGGCTTTCATAACT 140646 Query 159823 GGACGTTAAATCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGTGGAGCACTACTCA 159882 |||| ||||| || |||||||||||||| || ||||| | |||||| || || | Sbjct 140647 GGACTTTAAACCCATTCCATATGATGGGTGTCGCTGGAGTTTTAGGTGCTGCTCTTTTAT 140706 Query 159883 GTGCCATCCATGGCGTTACTGTAGAGAACACACTGTATGAAGATGGAGAACAAGCAAATA 159942 | || || || || | |||||| ||||| || | | ||||||||| || ||||| | Sbjct 140707 GCGCAATTCACGGTGCTACTGTTGAGAATACTTTATTTGAAGATGGTGATGGTGCAAACA 140766 Query 159943 CCTTTAAGGCGTTTGATTCAACTCA 159967 | || || ||| | ||||||| Sbjct 140767 CATTCCGTGCTTTTAACCCAACTCA 140791 >seq467 Length=265627 Score = 147 bits (162), Expect = 2e-30 Identities = 142/182 (78%), Gaps = 3/182 (2%) Strand=Plus/Minus Query 158404 CACGATGGCATTCAACCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGG 158463 ||| ||||| |||||| | || ||||| ||||| ||||| || | |||| |||| || Sbjct 211265 CACTATGGCTTTCAACTTAAATGGTTTTAACTTTAACCAATCTGTTGTTGACAGTCAAGG 211206 Query 158464 TCGTGTGTTGAACACCTGGGCAGATGTACTGAACCGCGCTGGTCTTGGTATGGAAGTTAT 158523 |||||| | ||||| ||||| ||| | | ||||| ||| ||||||||||||||||| Sbjct 211205 TCGTGTAATTAACACTTGGGCTGATATTATCAACCGTGCTAACCTTGGTATGGAAGTTAT 211146 Query 158524 GCATGAGCGTAACGCACACAACTTCCCACTCGACCTTGCTGCTGCTGAGTCAACTCCTGT 158583 |||||| |||||||| ||||||||||| || ||| | ||||||| ||| | |||||| Sbjct 211145 GCATGAACGTAACGCTCACAACTTCCCTCTAGACTTAGCTGCTGTTGA---AGCTCCTGC 211089 Query 158584 TG 158585 || Sbjct 211088 TG 211087 >seq3792 Length=366655 Score = 136 bits (150), Expect = 4e-27 Identities = 125/158 (79%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 157934 TACCGTTTAGGTATGCGCCCCTGGATCTGTGTAGCATATTCTGCTCCAGTCGCTGCAGCA 157993 ||||||||||||||||| || ||||| ||| |||||||| |||||||| ||||| || Sbjct 281815 TACCGTTTAGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCAGTTGCTGCTGCT 281874 Query 157994 TCTGCTGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCCGATGCTATGCCTCTT 158053 ||||||| ||| | |||| ||| | |||||||| |||||| || | ||||||| | Sbjct 281875 ACTGCTGTTTTCTTGATCTACCCTATTGGTCAAGGAAGTTTCTCAGACGGTATGCCTTTA 281934 Query 158054 GGTATCTCTGGTACTTTTAACTACATGCTTGTATTCCA 158091 ||||||||||||||||| || | |||| ||| |||| Sbjct 281935 GGTATCTCTGGTACTTTCAATTTCATGACTGTTCTCCA 281972 >seq3282 Length=366234 Score = 118 bits (130), Expect = 1e-21 Identities = 127/168 (76%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 158375 GGCATCTGGTTCACCGCCCTTGGCGTCTCCACGATGGCATTCAACCTGAACGGTTTCAAC 158434 || || ||||| || || | || || ||| ||||| |||||| | || ||||| ||| Sbjct 190886 GGTATTTGGTTTACTGCTTTAGGTATCAGCACTATGGCTTTCAACTTAAATGGTTTTAAC 190945 Query 158435 TTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGAACACCTGGGCAGATGTACTG 158494 || ||||| || | |||| |||| |||||||| | ||||| ||||| ||| | | Sbjct 190946 TTTAACCAATCTGTTGTTGACAGTCAAGGTCGTGTAATTAACACTTGGGCTGATATTATC 191005 Query 158495 AACCGCGCTGGTCTTGGTATGGAAGTTATGCATGAGCGTAACGCACAC 158542 ||||| ||| ||||||||||||||||||||||| |||||||| ||| Sbjct 191006 AACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAACGCTCAC 191053 >seq1308 Length=500924 Score = 113 bits (124), Expect = 5e-20 Identities = 102/128 (80%), Gaps = 3/128 (2%) Strand=Plus/Minus Query 158458 TCAGGGTCGTGTGTTGAACACCTGGGCAGATGTACTGAACCGCGCTGGTCTTGGTATGGA 158517 ||| |||||||| | ||||| ||||| ||| | | ||||| ||| ||||||||||| Sbjct 59770 TCAAGGTCGTGTAATTAACACTTGGGCTGATATTATCAACCGTGCTAACCTTGGTATGGA 59711 Query 158518 AGTTATGCATGAGCGTAACGCACACAACTTCCCACTCGACCTTGCTGCTGCTGAGTCAAC 158577 |||||||||||| |||||||| ||||||||||| || ||| | ||||||| ||| | | Sbjct 59710 AGTTATGCATGAACGTAACGCTCACAACTTCCCTCTAGACTTAGCTGCTGTTGA---AGC 59654 Query 158578 TCCTGTTG 158585 ||||| || Sbjct 59653 TCCTGCTG 59646 >seq164 Length=700310 Score = 104 bits (114), Expect = 3e-17 Identities = 123/167 (74%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 160125 AATCTTCGTGCTTACGATTTCGTAAGTCAAGAGATCAGAGCAGCAGAAGATCCAGAATTT 160184 ||| | ||||| |||||||| || ||||| || | |||||||| |||||||||||| Sbjct 563857 AATTTACGTGCCTACGATTTTGTTTCCCAAGAAATTCGTGCAGCAGAGGATCCAGAATTT 563916 Query 160185 GAGACCTTCTACACCAAAAACATCCTATTGAACGAAGGACTACGTGCATGGTTGGCACCT 160244 || || || || || ||||| || |||| || ||||| | | || ||| ||||| || Sbjct 563917 GAAACTTTTTATACAAAAAATATTTTATTAAATGAAGGTATTAGAGCTTGGATGGCAGCT 563976 Query 160245 GCTGATCAACCCCATGAAAACTTTATCTTCCCAGAAGAAGTATTGCC 160291 ||||| || |||||||| || | |||||||| || || |||| Sbjct 563977 CAAGATCAGCCTCATGAAAATCTTGTATTCCCAGAGGAGGTTCTGCC 564023 >seq3761 Length=231418 Score = 95.1 bits (104), Expect = 1e-14 Identities = 108/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 157728 CCGTCGCTGGTTCACTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTACCATCTT 157787 |||| ||||||| || | || || || |||||||| |||||||| || | || | | Sbjct 108171 CCGTATCTGGTTCTCTTCTTTACGGAAATAACATCATTTCTGGTGCTATTATTCCTACCT 108230 Query 157788 CCAACGCAATTGGTCTTCACTTCTATCCCATCTGGGAAGCCGCATCACTTGATGAGTGGC 157847 | || || ||| | |||||||| || || |||||||| || || ||||||| ||| Sbjct 108231 CTGCAGCTATCGGTTTACACTTCTACCCTATTTGGGAAGCTGCTTCTGTTGATGAATGGT 108290 Query 157848 TGTATAACGGTGGTCCTTTCCAACT 157872 |||| ||||||||||||| | |||| Sbjct 108291 TGTACAACGGTGGTCCTTACGAACT 108315 >seq595 Length=533780 Score = 91.5 bits (100), Expect = 2e-13 Identities = 118/163 (72%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 160099 CTATTGGCATTATTGGCCTTGCTCTTAATCTTCGTGCTTACGATTTCGTAAGTCAAGAGA 160158 ||||||| || | || | ||| | ||| | ||||| |||||||| || ||||| | Sbjct 284346 CTATTGGGGTTGTAGGTTTAGCTTTAAATTTACGTGCCTACGATTTTGTTTCCCAAGAAA 284287 Query 160159 TCAGAGCAGCAGAAGATCCAGAATTTGAGACCTTCTACACCAAAAACATCCTATTGAACG 160218 | | |||||||| |||||||||||||| || || || || ||||| || |||| || | Sbjct 284286 TTCGTGCAGCAGAGGATCCAGAATTTGAAACTTTTTATACAAAAAATATTTTATTAAATG 284227 Query 160219 AAGGACTACGTGCATGGTTGGCACCTGCTGATCAACCCCATGA 160261 |||| | | || ||| ||||| || ||||| || ||||| Sbjct 284226 AAGGTATTAGAGCTTGGATGGCAGCTCAAGATCAGCCTCATGA 284184 >seq1921 Length=72791 Score = 84.2 bits (92), Expect = 2e-11 Identities = 55/61 (90%), Gaps = 0/61 (0%) Strand=Plus/Plus Query 158507 CTTGGTATGGAAGTTATGCATGAGCGTAACGCACACAACTTCCCACTCGACCTTGCTGCT 158566 ||||||||||||||||||||||| |||||||| ||||||||||| || ||| | |||||| Sbjct 54767 CTTGGTATGGAAGTTATGCATGAACGTAACGCTCACAACTTCCCTCTGGACTTAGCTGCT 54826 Query 158567 G 158567 | Sbjct 54827 G 54827 >seq470 Length=504015 Score = 82.4 bits (90), Expect = 8e-11 Identities = 129/185 (70%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 158750 TACATTCTAGACGCAGCAGAAGAAGCAGGAGTTGATATTAATTACTCTTGTCGTGCTGGT 158809 ||||| | ||||| || |||||||| ||| | | | |||||||| ||||| ||| Sbjct 204296 TACATCTTGGACGCCGCTGAAGAAGCCGGACTCTCTCTGCCCTACTCTTGCCGTGCCGGT 204237 Query 158810 GCTTGCTCTTCATGTGCAGGTAAAATTGTATCTGGAACTGTTGATCAGAGTGATCAGTCG 158869 ||||||||||| || ||||| || | |||| || || || ||| ||||| Sbjct 204236 GCTTGCTCTTCTTGCGCAGGAAAGGTCACCGCTGGCGAGGTCGACCAAGCTGACCAGTCC 204177 Query 158870 TTCTTAGACGATGATCAGATTGCAGCAGGATTTGTTCTTACGTGTGTAGCATATCCAACA 158929 ||||| |||||||| ||||| | | ||||| || || || || | || || || || Sbjct 204176 TTCTTGGACGATGACCAGATGGATGAGGGATTCGTCCTGACCTGCATTGCGTACCCCACC 204117 Query 158930 TCTGA 158934 ||||| Sbjct 204116 TCTGA 204112 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548346042188840