Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marchantia_20polymorpha_20subsp._20ruderalis_20[genbank_20GCA_5F0016 41455.1_202016-05-10] 4,137 sequences; 205,718,403 total letters Query= NC_021536.1 Length=171797 Score E Sequences producing significant alignments: (Bits) Value seq2878 250 3e-61 seq3761 136 4e-27 seq467 129 6e-25 seq164 125 8e-24 seq3792 120 3e-22 seq595 113 5e-20 seq3282 109 6e-19 seq2371 105 7e-18 seq470 104 3e-17 seq1308 96.9 4e-15 >seq2878 Length=397857 Score = 250 bits (276), Expect = 3e-61 Identities = 352/492 (72%), Gaps = 2/492 (0%) Strand=Plus/Plus Query 152530 AACTTTCTTACTGCGGCAGTTTCTACTCCAGCAGATGCTATGGGTCATTCTCTTCTGCTT 152589 || ||| | ||||| || ||||||||||||||| || | | | ||||||| | || | Sbjct 140289 AATTTTTTAACTGCCGCTGTTTCTACTCCAGCAAATAGTTTAGCTCATTCTTTACTATTA 140348 Query 152590 CTCTGGGGTCCTGAGGCTCAAGGGGATTTCGTCAGATGGATTCAGCTCGGAGGACTCTGG 152649 | ||||| ||||| || ||||| ||||| | ||| || | || || | ||| Sbjct 140349 TTATGGGGACCTGAAGCACAAGGTGATTTTACTCGTTGGTGCCAATTAGGTGGTTTATGG 140408 Query 152650 GCTTTTGTGGCGCTCCACGGGGCTTTCGCTCTAATCGGTTTCATGCTTCGCCAGTTTGAA 152709 ||||||| || || || || || || || |||| || || ||| | || || |||||| Sbjct 140409 ACTTTTGTAGCTCTTCATGGTGCATTTGCCTTAATAGGCTTTATGTTACGACAATTTGAA 140468 Query 152710 CTGGCACG-TCTCATCGGTATCCGTCCCTACAATGCTATTGCGTTCTCTGGTCCTATCGC 152768 || || | ||| || | | ||||| || ||||| |||||||| ||||| ||||| || Sbjct 140469 CTTGCTAGATCTGTTCAAT-TACGTCCTTATAATGCAATTGCGTTTTCTGGACCTATTGC 140527 Query 152769 TGTTTTTGTTAGCGTCTTTCTCATCTACCCTCTGGGTCAATCGAGTTGGTTTTTCGCTCC 152828 ||||||||| || ||||| || || ||| | || ||||| |||||||||| || || Sbjct 140528 TGTTTTTGTATCTGTTTTTCTTATTTATCCTTTAGGACAATCAGGTTGGTTTTTTGCACC 140587 Query 152829 ATCTTTCGGGGTCGCAGCAATCTTCCGATTCCTTCTCTTCCTTCAAGGATTCCACAACTG 152888 ||| || || || ||||| || |||| |||| || ||||||| || || ||||| Sbjct 140588 TAGTTTTGGTGTAGCTGCAATTTTTAGATTTATTCTTTTTTTTCAAGGCTTTCATAACTG 140647 Query 152889 GACATTGAATCCGTTTCATATGATGGGTGTTGCAGGTATTTTGGGAGGGGCCTTGCTTTC 152948 ||| || || || || |||||||||||||| || || |||| || | || | | | Sbjct 140648 GACTTTAAACCCATTCCATATGATGGGTGTCGCTGGAGTTTTAGGTGCTGCTCTTTTATG 140707 Query 152949 TGCCATTCATGGTGTTACAGTAGAGAATACTTTGTATCAAGATGGTGAACAAGCAAACAC 153008 || ||||| |||| ||| || ||||||||||| | | |||||||||| |||||||| Sbjct 140708 CGCAATTCACGGTGCTACTGTTGAGAATACTTTATTTGAAGATGGTGATGGTGCAAACAC 140767 Query 153009 TTTCAAAGCTTT 153020 ||| ||||| Sbjct 140768 ATTCCGTGCTTT 140779 >seq3761 Length=231418 Score = 136 bits (150), Expect = 4e-27 Identities = 117/145 (81%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 150987 CCGTTGCTGGTTCTCTGATGTACGGTAACAACATCATCTCTGGTGCTGTTGTTCCTTCTT 151046 |||| |||||||||| | ||||| || |||||||| ||||||||| || ||||| | | Sbjct 108171 CCGTATCTGGTTCTCTTCTTTACGGAAATAACATCATTTCTGGTGCTATTATTCCTACCT 108230 Query 151047 CTAACGCTATCGGTCTGCACTTCTATCCCATCTGGGAAGCAGCCTCTCTCGATGAATGGC 151106 || ||||||||| | |||||||| || || |||||||| || ||| | ||||||||| Sbjct 108231 CTGCAGCTATCGGTTTACACTTCTACCCTATTTGGGAAGCTGCTTCTGTTGATGAATGGT 108290 Query 151107 TCTACAACGGTGGTCCTTTCCAACT 151131 | |||||||||||||||| | |||| Sbjct 108291 TGTACAACGGTGGTCCTTACGAACT 108315 >seq467 Length=265627 Score = 129 bits (142), Expect = 6e-25 Identities = 134/176 (76%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 151655 GGTGTCAGCACCATGGCATTCAACCTGAACGGTTTCAACTTCAACCAGTCCATCATGGAT 151714 ||| ||||||| ||||| |||||| | || ||||| ||||| ||||| || | | || Sbjct 211273 GGTATCAGCACTATGGCTTTCAACTTAAATGGTTTTAACTTTAACCAATCTGTTGTTGAC 211214 Query 151715 GGTCAGGGCAAAGTCCTGAACACCTGGGCAGACGTTCTGAACCGTGCAGGTCTGGGTATG 151774 |||| || || | ||||| ||||| || || | |||||||| || |||||| Sbjct 211213 AGTCAAGGTCGTGTAATTAACACTTGGGCTGATATTATCAACCGTGCTAACCTTGGTATG 211154 Query 151775 GAAGTTATGCACGAGCGTAATGCTCACAACTTCCCTCTCGACCTTGCTGCTGCTGA 151830 ||||||||||| || ||||| ||||||||||||||||| ||| | ||||||| ||| Sbjct 211153 GAAGTTATGCATGAACGTAACGCTCACAACTTCCCTCTAGACTTAGCTGCTGTTGA 211098 >seq164 Length=700310 Score = 125 bits (138), Expect = 8e-24 Identities = 134/177 (76%), Gaps = 0/177 (0%) Strand=Plus/Plus Query 153190 AATCTTCGTGCTTACGATTTTGTATCTCAAGAAATCAGGGCGTCAGAAGATCCTGAATTT 153249 ||| | ||||| ||||||||||| || |||||||| | || |||| ||||| |||||| Sbjct 563857 AATTTACGTGCCTACGATTTTGTTTCCCAAGAAATTCGTGCAGCAGAGGATCCAGAATTT 563916 Query 153250 GAGACGTTCTATACGAAGAATATCCTTTTGAACGAAGGTCTTCGTGCTTGGTTGGCACCT 153309 || || || ||||| || ||||| | || || |||||| || | |||||| ||||| || Sbjct 563917 GAAACTTTTTATACAAAAAATATTTTATTAAATGAAGGTATTAGAGCTTGGATGGCAGCT 563976 Query 153310 GTTGACCAACCTCATGAGAACTTCGTGTTCCCTGAAGAGGTATTGCCACGAGGCAAC 153366 || || |||||||| || | || ||||| || ||||| ||||||| || ||| Sbjct 563977 CAAGATCAGCCTCATGAAAATCTTGTATTCCCAGAGGAGGTTCTGCCACGTGGAAAC 564033 >seq3792 Length=366655 Score = 120 bits (132), Expect = 3e-22 Identities = 124/160 (78%), Gaps = 2/160 (1%) Strand=Plus/Plus Query 151192 TTACCGCTTGGGTATGCGTCCCTGGATCTGC-GTTGCATACTCTGCTCCAGTTGCTGCTG 151250 |||||| || ||||||||||| ||||| ||| |||||||| || |||||||||||||||| Sbjct 281814 TTACCGTTTAGGTATGCGTCCTTGGAT-TGCTGTTGCATATTCAGCTCCAGTTGCTGCTG 281872 Query 151251 CGAGTGCAGTGTTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGATGCAATGCCCC 151310 | | ||| || ||| | |||| ||| | |||||||| |||||| || | ||||| Sbjct 281873 CTACTGCTGTTTTCTTGATCTACCCTATTGGTCAAGGAAGTTTCTCAGACGGTATGCCTT 281932 Query 151311 TGGGTATTTCTGGCACATTCAACTACATGCTTGTCTTCCA 151350 | ||||| ||||| || ||||| | |||| ||| |||| Sbjct 281933 TAGGTATCTCTGGTACTTTCAATTTCATGACTGTTCTCCA 281972 >seq595 Length=533780 Score = 113 bits (124), Expect = 5e-20 Identities = 145/200 (73%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 153127 ATGCTGTTTGTACCTGTTATGGGTCTTTGGACCTCTTCTATTGGAATCATTGGTCTTGCT 153186 ||||| || ||||| || | || | |||| | ||||||| | | ||| | ||| Sbjct 284383 ATGCTATTCGTACCAGTAACTGGATTATGGATGAGTGCTATTGGGGTTGTAGGTTTAGCT 284324 Query 153187 CTCAATCTTCGTGCTTACGATTTTGTATCTCAAGAAATCAGGGCGTCAGAAGATCCTGAA 153246 | ||| | ||||| ||||||||||| || |||||||| | || |||| ||||| ||| Sbjct 284323 TTAAATTTACGTGCCTACGATTTTGTTTCCCAAGAAATTCGTGCAGCAGAGGATCCAGAA 284264 Query 153247 TTTGAGACGTTCTATACGAAGAATATCCTTTTGAACGAAGGTCTTCGTGCTTGGTTGGCA 153306 ||||| || || ||||| || ||||| | || || |||||| || | |||||| ||||| Sbjct 284263 TTTGAAACTTTTTATACAAAAAATATTTTATTAAATGAAGGTATTAGAGCTTGGATGGCA 284204 Query 153307 CCTGTTGACCAACCTCATGA 153326 || || || |||||||| Sbjct 284203 GCTCAAGATCAGCCTCATGA 284184 >seq3282 Length=366234 Score = 109 bits (120), Expect = 6e-19 Identities = 125/168 (74%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 151634 GGTATCTGGTTCACTGCACTTGGTGTCAGCACCATGGCATTCAACCTGAACGGTTTCAAC 151693 ||||| ||||| ||||| | ||| ||||||| ||||| |||||| | || ||||| ||| Sbjct 190886 GGTATTTGGTTTACTGCTTTAGGTATCAGCACTATGGCTTTCAACTTAAATGGTTTTAAC 190945 Query 151694 TTCAACCAGTCCATCATGGATGGTCAGGGCAAAGTCCTGAACACCTGGGCAGACGTTCTG 151753 || ||||| || | | || |||| || || | ||||| ||||| || || | Sbjct 190946 TTTAACCAATCTGTTGTTGACAGTCAAGGTCGTGTAATTAACACTTGGGCTGATATTATC 191005 Query 151754 AACCGTGCAGGTCTGGGTATGGAAGTTATGCACGAGCGTAATGCTCAC 151801 |||||||| || ||||||||||||||||| || ||||| |||||| Sbjct 191006 AACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAACGCTCAC 191053 >seq2371 Length=186017 Score = 105 bits (116), Expect = 7e-18 Identities = 105/136 (77%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 150932 TTCATCGTGGCATTCATCGCTGCTCCCCCTGTGGACATCGATGGCATCCGTGAACCCGTT 150991 ||||| | || || || || ||||| ||||| || || || || ||||||||||| || Sbjct 41006 TTCATTATTGCTTTTATTGCAGCTCCTCCTGTAGATATTGACGGTATCCGTGAACCTGTA 41065 Query 150992 GCTGGTTCTCTGATGTACGGTAACAACATCATCTCTGGTGCTGTTGTTCCTTCTTCTAAC 151051 |||||||||| | ||||| || |||||||| ||||||||| || ||||| | ||| Sbjct 41066 TCTGGTTCTCTTCTTTACGGAAATAACATCATTTCTGGTGCTATTATTCCTACCTCTGCA 41125 Query 151052 GCTATCGGTCTGCACT 151067 ||||||||| | |||| Sbjct 41126 GCTATCGGTTTACACT 41141 >seq470 Length=504015 Score = 104 bits (114), Expect = 3e-17 Identities = 140/195 (72%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 152004 TACATCTTGGATGCTGCTGAGGAACAAGGAGTTGATATGAACTACTCTTGTCGTGCTGGT 152063 ||||||||||| || ||||| ||| ||| | | || ||||||||| ||||| ||| Sbjct 204296 TACATCTTGGACGCCGCTGAAGAAGCCGGACTCTCTCTGCCCTACTCTTGCCGTGCCGGT 204237 Query 152064 GCATGTTCCTCTTGTGCTGGTAAGATTGTGAGTGGTACAGTTGATCAGAGTGACCAATCA 152123 || || || ||||| || || ||| | ||| || || || |||||| || Sbjct 204236 GCTTGCTCTTCTTGCGCAGGAAAGGTCACCGCTGGCGAGGTCGACCAAGCTGACCAGTCC 204177 Query 152124 TTCTTGGATGATGACCAGATTGAATCAGGATTCGTGCTGACCTGTGTTGCATATCCAACT 152183 |||||||| ||||||||||| || |||||||| |||||||| |||| || || || Sbjct 204176 TTCTTGGACGATGACCAGATGGATGAGGGATTCGTCCTGACCTGCATTGCGTACCCCACC 204117 Query 152184 TCTGATGTCACCCTC 152198 ||||| || ||| || Sbjct 204116 TCTGACGTTACCATC 204102 >seq1308 Length=500924 Score = 96.9 bits (106), Expect = 4e-15 Identities = 80/98 (82%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 151733 AACACCTGGGCAGACGTTCTGAACCGTGCAGGTCTGGGTATGGAAGTTATGCACGAGCGT 151792 ||||| ||||| || || | |||||||| || ||||||||||||||||| || ||| Sbjct 59754 AACACTTGGGCTGATATTATCAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGT 59695 Query 151793 AATGCTCACAACTTCCCTCTCGACCTTGCTGCTGCTGA 151830 || ||||||||||||||||| ||| | ||||||| ||| Sbjct 59694 AACGCTCACAACTTCCCTCTAGACTTAGCTGCTGTTGA 59657 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 549593977651640