Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marchantia_20polymorpha_20subsp._20ruderalis_20[genbank_20GCA_5F0016 41455.1_202016-05-10] 4,137 sequences; 205,718,403 total letters Query= NC_021559.1 Length=179063 Score E Sequences producing significant alignments: (Bits) Value seq2878 183 3e-41 seq164 123 3e-23 seq467 111 2e-19 seq595 104 3e-17 seq3761 93.3 5e-14 seq1308 86.0 7e-12 >seq2878 Length=397857 Score = 183 bits (202), Expect = 3e-41 Identities = 320/465 (69%), Gaps = 8/465 (2%) Strand=Plus/Plus Query 73535 AATTTTTTAACTGCAGCAGTATCAACACCTGGTGATGCTATGGGTCATAGTCTATTGTTC 73594 |||||||||||||| || || || || || | || | | | |||| | || | || Sbjct 140289 AATTTTTTAACTGCCGCTGTTTCTACTCCAGCAAATAGTTTAGCTCATTCTTTACTATTA 140348 Query 73595 CTTTGGGGACCAGAGGCACAAGGAGATCTTGTACGATGGTTTCAATTAGGTGGACTATGG 73654 | |||||||| || |||||||| ||| || || |||| ||||||||||| ||||| Sbjct 140349 TTATGGGGACCTGAAGCACAAGGTGATTTTACTCGTTGGTGCCAATTAGGTGGTTTATGG 140408 Query 73655 AACTTTGTAGCATTACATGGAGTCTTTGGACTCATAGGTTTCATGCTTAGACAGTTTGAG 73714 | |||||||| | ||||| | |||| | ||||| || ||| | |||| ||||| Sbjct 140409 ACTTTTGTAGCTCTTCATGGTGCATTTGCCTTAATAGGCTTTATGTTACGACAATTTGAA 140468 Query 73715 ATTGCAGGACTTGTTGGGATACGTCCTTACAACGCATTAGCTTTTTCAGCAGTTATCGCA 73774 |||| || |||| |||||||||| || ||| | || ||||| | | ||| || Sbjct 140469 CTTGCTAGATCTGTTCAATTACGTCCTTATAATGCAATTGCGTTTTCTGGACCTATTGCT 140528 Query 73775 GTATTCACGAGCATC----TTTCTAATATATCCTTTAGGACAGCATAGTTGGTTCTTCGC 73830 || || | ||| ||||| || |||||||||||||| ||||||| || || Sbjct 140529 GTTTT----TGTATCTGTTTTTCTTATTTATCCTTTAGGACAATCAGGTTGGTTTTTTGC 140584 Query 73831 ACCTTCATTCGGTGTCGCAGCAATCTTTCGTTATATTTTATTCATACAGGGTTTCCACAA 73890 |||| || ||||| || ||||| ||| | | |||| | || | || || || || || Sbjct 140585 ACCTAGTTTTGGTGTAGCTGCAATTTTTAGATTTATTCTTTTTTTTCAAGGCTTTCATAA 140644 Query 73891 TATAACTCTTAATCCATTTCATATGATGGGTGTAGCAGGTATACTTGGTGGAGCATTACT 73950 ||| | || ||||| |||||||||||||| || || | | |||| || | | Sbjct 140645 CTGGACTTTAAACCCATTCCATATGATGGGTGTCGCTGGAGTTTTAGGTGCTGCTCTTTT 140704 Query 73951 ATGTGCCATACATGGTGCAACAGTACAGAACACATTGTATGAAGA 73995 ||| || || || ||||| || || |||| || || | |||||| Sbjct 140705 ATGCGCAATTCACGGTGCTACTGTTGAGAATACTTTATTTGAAGA 140749 >seq164 Length=700310 Score = 123 bits (136), Expect = 3e-23 Identities = 128/168 (76%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 74225 GCATACGACTTTGTATCTCAAGAGATAAGAGCAGCAGAAGACCCAGAGTTTGAAACCTTC 74284 || ||||| ||||| || ||||| || | |||||||| || ||||| |||||||| || Sbjct 563866 GCCTACGATTTTGTTTCCCAAGAAATTCGTGCAGCAGAGGATCCAGAATTTGAAACTTTT 563925 Query 74285 TACACTAAGAACATTCTTCTTAATGAAGGTATGAGAGCATGGATGTCATCTGTCGATCAA 74344 || || || || ||| | | ||||||||||| ||||| |||||| || || ||||| Sbjct 563926 TATACAAAAAATATTTTATTAAATGAAGGTATTAGAGCTTGGATGGCAGCTCAAGATCAG 563985 Query 74345 CCCCATGAGAACTTTGTGTTCCCAGAAGAAGTCTTGCCACGAGGCAAC 74392 || ||||| || |||| |||||||| || || ||||||| || ||| Sbjct 563986 CCTCATGAAAATCTTGTATTCCCAGAGGAGGTTCTGCCACGTGGAAAC 564033 >seq467 Length=265627 Score = 111 bits (122), Expect = 2e-19 Identities = 135/181 (75%), Gaps = 10/181 (6%) Strand=Plus/Minus Query 73051 GGTATCTGTACAATGGCATTCAACCTTAACGGATTCAACTTCAACCAATCAGTTGTAGAT 73110 |||||| | || ||||| |||||| | || || || ||||| |||||||| ||||| || Sbjct 211273 GGTATCAGCACTATGGCTTTCAACTTAAATGGTTTTAACTTTAACCAATCTGTTGTTGA- 211215 Query 73111 GCAAACGGAAAGATTGT---ACCAACA--TGGGGAGATGTTCTTAACAGAGCAAACCTTG 73165 || | ||| | || | |||| |||| ||| || | ||| | || ||||||| Sbjct 211214 -CAGTC---AAGGTCGTGTAATTAACACTTGGGCTGATATTATCAACCGTGCTAACCTTG 211159 Query 73166 GAATGGAAGTTATGCATGAAAGAAATGCACACAACTTCCCACTAGACCTAGCATCTGCTG 73225 | |||||||||||||||||| | || || ||||||||||| |||||| |||| ||| || Sbjct 211158 GTATGGAAGTTATGCATGAACGTAACGCTCACAACTTCCCTCTAGACTTAGCTGCTGTTG 211099 Query 73226 A 73226 | Sbjct 211098 A 211098 >seq595 Length=533780 Score = 104 bits (114), Expect = 3e-17 Identities = 123/164 (75%), Gaps = 2/164 (1%) Strand=Plus/Minus Query 74190 CTATAGGTATCGTAGGTCTAGCACTTAACCTTA-GAGCATACGACTTTGTATCTCAAGAG 74248 |||| || | |||||| |||| |||| ||| | || ||||| ||||| || ||||| Sbjct 284346 CTATTGGGGTTGTAGGTTTAGCT-TTAAATTTACGTGCCTACGATTTTGTTTCCCAAGAA 284288 Query 74249 ATAAGAGCAGCAGAAGACCCAGAGTTTGAAACCTTCTACACTAAGAACATTCTTCTTAAT 74308 || | |||||||| || ||||| |||||||| || || || || || ||| | | ||| Sbjct 284287 ATTCGTGCAGCAGAGGATCCAGAATTTGAAACTTTTTATACAAAAAATATTTTATTAAAT 284228 Query 74309 GAAGGTATGAGAGCATGGATGTCATCTGTCGATCAACCCCATGA 74352 |||||||| ||||| |||||| || || ||||| || ||||| Sbjct 284227 GAAGGTATTAGAGCTTGGATGGCAGCTCAAGATCAGCCTCATGA 284184 >seq3761 Length=231418 Score = 93.3 bits (102), Expect = 5e-14 Identities = 102/133 (77%), Gaps = 2/133 (2%) Strand=Plus/Plus Query 72391 GGTTCT-TTCTTATATGGTAACAACATCATCTCTGGTGCTGTAGTTCCATCTTCAAACGC 72449 |||||| ||||| || || || |||||||| ||||||||| | |||| | || || Sbjct 108179 GGTTCTCTTCTT-TACGGAAATAACATCATTTCTGGTGCTATTATTCCTACCTCTGCAGC 108237 Query 72450 AATAGGATTACACTTCTATCCCATCTGGGAAGCAGCCACTATGGACGAGTGGTTGTATAA 72509 || || ||||||||||| || || |||||||| || || | || || |||||||| || Sbjct 108238 TATCGGTTTACACTTCTACCCTATTTGGGAAGCTGCTTCTGTTGATGAATGGTTGTACAA 108297 Query 72510 CGGAGGTCCTTAC 72522 ||| ||||||||| Sbjct 108298 CGGTGGTCCTTAC 108310 >seq1308 Length=500924 Score = 86.0 bits (94), Expect = 7e-12 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 73132 ACATGGGGAGATGTTCTTAACAGAGCAAACCTTGGAATGGAAGTTATGCATGAAAGAAAT 73191 || |||| ||| || | ||| | || |||||||| |||||||||||||||||| | || Sbjct 59751 ACTTGGGCTGATATTATCAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAAC 59692 Query 73192 GCACACAACTTCCCACTAGACCTAGCATCTGCTGA 73226 || ||||||||||| |||||| |||| ||| ||| Sbjct 59691 GCTCACAACTTCCCTCTAGACTTAGCTGCTGTTGA 59657 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 572843975273960