Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marchantia_20polymorpha_20subsp._20ruderalis_20[genbank_20GCA_5F0016 41455.1_202016-05-10] 4,137 sequences; 205,718,403 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq3885 95.1 1e-13 >seq3885 Length=497522 Score = 95.1 bits (104), Expect = 1e-13 Identities = 148/208 (71%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| |||||| ||| | || |||||||| || || |||||||| | | | Sbjct 97242 GCTTGGCCAGCTCGCCGGGCAGAGTGAGTCGCACGGCAGTTTGAATCTCGCGAGAAGCAA 97183 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGT-GCC-GATGCGGTCGAT 1254460 | || |||||| || | || ||||| | ||||| | ||| | | | |||| Sbjct 97182 TGGTCGGCTTCTTGTTGTAGCGAGCAAGACGAGCAGCCTCAGAAGCCAGCTTC--TCGAA 97125 Query 1254461 CATGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGG 1254520 |||||||||| || |||||||| | | ||| | || ||||| || | ||||| Sbjct 97124 GATGTCGTTGATGAAAGAGTTCATAATCCCCATGGCTTTCGACGAGATTCCGAACTCGGG 97065 Query 1254521 GTGCACCTGCTTGAGCACCTTGTAGATG 1254548 ||| |||||||||||||||||||||||| Sbjct 97064 GTGGACCTGCTTGAGCACCTTGTAGATG 97037 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6106799698406429