Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marchantia_20polymorpha_20subsp._20ruderalis_20[genbank_20GCA_5F0016 41455.1_202016-05-10] 4,137 sequences; 205,718,403 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq487 104 2e-17 seq2625 89.7 4e-13 seq4017 82.4 6e-11 >seq487 Length=466406 Score = 104 bits (114), Expect = 2e-17 Identities = 164/234 (70%), Gaps = 6/234 (3%) Strand=Plus/Plus Query 110272 AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGC---C 110328 ||||||||| || ||||| ||| | || || |||||||| || | ||| |||| | Sbjct 183332 AATGCAAATCTTCGTCAAGACTCTGACGGGGAAAACCATCACTCTGGAAGTGGAGAGCTC 183391 Query 110329 TGACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGA 110388 |||| || ||| | | || ||| || || ||||| || || | || || Sbjct 183392 TGAC---ACCATCGACAATGTGAAAGCCAAAATCCAGGACAAGGAGGGAATTCCTCCCGA 183448 Query 110389 TCAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTA 110448 || || || | || | || || || |||||||| |||| | ||| |||| ||||| Sbjct 183449 CCAGCAGCGATTGATCTTCGCTGGCAAGCAGCTGGAAGATGGTCGTACACTGGCCGATTA 183508 Query 110449 CAACATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGGAAA 110502 ||||||||||||||| || |||||||| ||||||| | |||||||| ||||| Sbjct 183509 CAACATTCAAAAAGAGTCGACGTTGCATCTGGTGTTGCGTCTGCGAGGAGGAAA 183562 >seq2625 Length=346021 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || || |||||||| || || ||||| || ||||| | || ||| | | Sbjct 281335 ATGCAGATTTTCGTCAAAACCTTGACTGGCAAGACGATTACTTTGGAGGTTGAGAGTTCC 281394 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || || | | | | || ||| || ||| ||||| || || | || || || Sbjct 281395 GACACCATTGACAATGTGAAAACCAAAATTCAAGACAAGGAGGGAATTCCTCCAGACCAG 281454 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || ||| | |||| ||| || |||||||| || |||| | ||| | || ||||||||| Sbjct 281455 CAGAGATTGATTTTTGCCGGGAAACAGCTTGAAGATGGTCGGACACTCGCCGATTACAAC 281514 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 || ||||| |||||||| ||||| |||| | || ||| |||| || Sbjct 281515 ATCCAAAAGGAATCTACCTTGCATTTGGTCCTGAGGCTGAGAGGAGG 281561 Score = 82.4 bits (90), Expect = 6e-11 Identities = 158/232 (68%), Gaps = 6/232 (3%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGC---CT 110329 ||||| || ||||| || || || ||||| || ||||| || | || |||| || Sbjct 281791 ATGCAGATTTTTGTGAAGACATTGACCGGTAAGACCATCACTCTTGAGGTGGAGAGCTCT 281850 Query 110330 GACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGAT 110389 ||| || | | | | || ||| ||||||| ||||| |||||| | || ||| Sbjct 281851 GAC---ACGATTGACAACGTGAAAACGAAGATTCAGGACAAGGAAGGCATCCCTCCAGAT 281907 Query 110390 CAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTAC 110449 || || || | |||| ||| || || || || ||||| | | || |||| || ||| Sbjct 281908 CAGCAGAGGTTGATTTTTGCAGGAAAGCAACTTGAGGACGGTCGTACCTTGGCCGACTAC 281967 Query 110450 AACATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGGAA 110501 ||||||||||| || ||||| | || |||| || || ||| | || |||| Sbjct 281968 AACATTCAAAAGGAGTCTACCCTCCATTTGGTCTTGAGGCTGAGGGGAGGAA 282019 >seq4017 Length=874442 Score = 82.4 bits (90), Expect = 6e-11 Identities = 157/230 (68%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGC---CT 110329 ||||| || || ||||| ||||| || || || || |||||| |||| |||| || Sbjct 472203 ATGCAGATCTTCGTCAAGACTTTGACGGGTAAGACAATTACCCTCGAGGTGGAGAGCTCT 472262 Query 110330 GACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGAT 110389 ||| || ||| | | ||||| || ||| || || || || | ||| || Sbjct 472263 GAC---ACCATCGACAATGTAAAGACTAAAATTCAAGATAAGGAGGGTATTCCCCCAGAC 472319 Query 110390 CAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTAC 110449 || || | || || | ||| || || ||||| ||||||| || || |||| |||||| Sbjct 472320 CAGCAGCGTCTGATCTTTGCCGGCAAGCAGCTTGAGGATGGAAGGACGCTGGCTGATTAC 472379 Query 110450 AACATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 ||||| ||||| || || || | ||| |||| | |||||| |||| || Sbjct 472380 AACATCCAAAAGGAGTCCACCCTTCACCTGGTTCTGAGACTGAGAGGAGG 472429 Score = 82.4 bits (90), Expect = 6e-11 Identities = 158/230 (69%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGA--GC-CT 110329 ||||| || || || || || || ||||| || || || || |||| || || || Sbjct 473571 ATGCAGATCTTCGTGAAGACCTTGACCGGGAAGACTATCACTCTCGAGGTCGAAAGCTCT 473630 Query 110330 GACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGAT 110389 ||| || ||| | | || ||| ||||| ||||| ||||| | || ||| Sbjct 473631 GAC---ACCATCGACAATGTCAAAACCAAGATCCAGGACAAGGAAGGAATTCCTCCCGAT 473687 Query 110390 CAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTAC 110449 || || ||| | || | ||| || || |||||||| |||| |||| ||||||||||| Sbjct 473688 CAGCAGAGATTGATCTTTGCAGGAAAGCAGCTGGAAGATGGACGAACCCTGGCGGATTAC 473747 Query 110450 AACATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 || || ||||||||||| || |||| | || | || |||||||| || Sbjct 473748 AATATCCAAAAAGAATCAACTCTGCATCTTGTTCTGAGGCTGCGAGGTGG 473797 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412820784655541