Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marchantia_20polymorpha_20subsp._20ruderalis_20[genbank_20GCA_5F0016 41455.1_202016-05-10] 4,137 sequences; 205,718,403 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq3885 134 2e-25 seq2984 91.5 2e-12 >seq3885 Length=497522 Score = 134 bits (148), Expect = 2e-25 Identities = 176/240 (73%), Gaps = 4/240 (2%) Strand=Plus/Minus Query 1485473 ACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCATGA 1485532 |||| || ||||||||||| ||||| |||||||| ||| ||||||| |||||| ||| Sbjct 97278 ACTTCGTCACGGCCTTGGTGCCCTCCGAGACGGCATGCTTGGCCAGCTCGCCGGGCAGAG 97219 Query 1485533 TCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGCGCG 1485592 | || |||||||| || || |||||||| | | || || |||||| ||| | Sbjct 97218 TGAGTCGCACGGCAGTTTGAATCTCGCGAGAAGCAATGGTCGGCTTCTTGTTGTAGCGAG 97159 Query 1485593 CCAGGCGGCCGGCCTC-GGTGCC-GATGCGGTCGATCATGTCGTTGACAAACGAGTTCAT 1485650 | || || | ||||| | ||| | | | |||| |||||||||| || |||||||| Sbjct 97158 CAAGACGAGCAGCCTCAGAAGCCAGCTTC--TCGAAGATGTCGTTGATGAAAGAGTTCAT 97101 Query 1485651 GATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTA 1485710 ||| ||| | ||| ||||| || | |||||||| |||||||||||||||||||| Sbjct 97100 AATCCCCATGGCTTTCGACGAGATTCCGAACTCGGGGTGGACCTGCTTGAGCACCTTGTA 97041 >seq2984 Length=694757 Score = 91.5 bits (100), Expect = 2e-12 Identities = 165/238 (69%), Gaps = 4/238 (2%) Strand=Plus/Plus Query 1485475 TTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCATGATC 1485534 |||||||| ||||||||||| || || ||||| ||| | ||||| || ||| | | ||| Sbjct 366263 TTGGTGACAGCCTTGGTACCTTCAGAAACGGCATGCTTCGCCAGCTCTCCGGGTAGAATC 366322 Query 1485535 AGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGCGCGCC 1485594 || | || || || |||||||| || | | ||| ||| ||| ||| |||||| Sbjct 366323 AGCCTTACCGCTGTTTGGATCTCACGTGAGGTGATGGTGGGCTTCTTATTATAGCGCGCT 366382 Query 1485595 AGGCGGCCGGCCT-CGGTGCC-GATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGA 1485652 || | | | || | | | ||| | | | |||| |||||||||| || || ||||| | Sbjct 366383 AGTCTGGCAGCTTCCTGAGCCAGCTTC--TCGAAGATGTCGTTGATGAAGGAATTCATAA 366440 Query 1485653 TCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTA 1485710 | ||| | ||| || || |||| || | || |||||||| | ||||||||| Sbjct 366441 TTCCCATAGCCTTGGACGAAATTCCCATCTCATGATGGACCTGCTTCAACACCTTGTA 366498 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7915806328441143