Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marchantia_20polymorpha_20subsp._20ruderalis_20[genbank_20GCA_5F0016 41455.1_202016-05-10] 4,137 sequences; 205,718,403 total letters Query= NC_022758.1 Length=44459 Score E Sequences producing significant alignments: (Bits) Value seq899 82.4 2e-11 >seq899 Length=1674 Score = 82.4 bits (90), Expect = 2e-11 Identities = 166/248 (67%), Gaps = 9/248 (4%) Strand=Plus/Plus Query 34174 GATTTTTCTGCAATAGAGGCAAGAGTCATAGCATGGTATGCAAAAGAACGATGGCGTTTA 34233 || || ||||| || ||||| | || || || ||| || | || | ||||| | Sbjct 405 GACTTCTCTGCCATTGAGGCCCGCGTGATTGCCTGGCTGGCTCAGGAGCTTTGGCGCCTG 464 Query 34234 GATGTGTTCAACACACACGGAAAGATATATGAAGCATCGGCTTCTCAAATGTTTAATGTC 34293 || ||||| || ||||| |||||||| || || || || |||||||||||| || Sbjct 465 GAGGTGTTTGCAACCCACGGCAAGATATACGAGGCGTCTGCATCTCAAATGTTTGGCGTG 524 Query 34294 CCGGTAGAAAGCATAACTAAAGGCGACCC---------TCTCAGACAAAAGGGAAAAGTG 34344 ||| | || | || | |||||| |||| ||||| |||||||| ||||| Sbjct 525 CCGCTTGAGCGGATTAAGAAAGGCAACCCGGAATATGAGCTCAGGCAAAAGGGCAAAGTC 584 Query 34345 TCCGAATTAGCTTTAGGTTATCAAGGTGGCGCTGGAGCTTTAAAAGCAATGGGTGCATTG 34404 | || | || || || || ||||| || | || ||||| | |||||||| || | Sbjct 585 GCGGAGCTGGCCTTGGGCTACCAAGGGGGATCGGGCGCTTTGATTGCAATGGGAGCCCTT 644 Query 34405 GAAATGGG 34412 || ||||| Sbjct 645 GACATGGG 652 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 142140216752274