Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marchantia_20polymorpha_20subsp._20ruderalis_20[genbank_20GCA_5F0016 41455.1_202016-05-10] 4,137 sequences; 205,718,403 total letters Query= NC_023426.1 Length=245717 Score E Sequences producing significant alignments: (Bits) Value seq2625 100 4e-16 >seq2625 Length=346021 Score = 100 bits (110), Expect = 4e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| ||||| | || || | |||||||| || || || | || || ||| || Sbjct 280880 TGCAGATATTTGTGAAGACGCTTACAGGAAAGACCATCACCTTGGAGGTCGAAAGCTCCG 280939 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | || || | || || |||| || || ||| ||| || || ||||| || || |||| Sbjct 280940 ACACCATCGACAACGTCAAAACCAAGATCCAAGATAAGGAGGGTATTCCTCCAGACCAAC 280999 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | ||| | || ||||||||||| || || || || ||||| | | |||||||||| Sbjct 281000 AGAGATTGATCTTTGCAGGTAAGCAGTTGGAGGACGGCCGAACGCTGGCCGATTATAATA 281059 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTA 146259 |||| || || || ||| ||||| | || || |||| || ||||||| Sbjct 281060 TACAGAAGGAGTCTACTCTCCATCTCGTCTTGAGATTGAGGGGAGGTA 281107 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 786125745370040