Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marchantia_20polymorpha_20subsp._20ruderalis_20[genbank_20GCA_5F0016 41455.1_202016-05-10] 4,137 sequences; 205,718,403 total letters Query= NC_023584.1 Length=170438 Score E Sequences producing significant alignments: (Bits) Value seq2878 244 1e-59 seq467 141 1e-28 seq3282 127 2e-24 seq3792 123 3e-23 seq3761 116 4e-21 seq164 113 5e-20 seq1308 104 3e-17 seq595 98.7 1e-15 seq1921 84.2 2e-11 >seq2878 Length=397857 Score = 244 bits (270), Expect = 1e-59 Identities = 358/504 (71%), Gaps = 2/504 (0%) Strand=Plus/Plus Query 158946 AACTTTCTTACAGCAGCAGTTTCGACTCCAGCTGATGCTATGGGTCATTCTCTTCTGCTT 159005 || ||| | || || || ||||| |||||||| || | | | ||||||| | || | Sbjct 140289 AATTTTTTAACTGCCGCTGTTTCTACTCCAGCAAATAGTTTAGCTCATTCTTTACTATTA 140348 Query 159006 CTCTGGGGTCCTGAGGCTCAAGGGGATTTCGTCAGGTGGGTCCAACTTGGGGGACTCTGG 159065 | ||||| ||||| || ||||| ||||| | ||| |||| | || || | ||| Sbjct 140349 TTATGGGGACCTGAAGCACAAGGTGATTTTACTCGTTGGTGCCAATTAGGTGGTTTATGG 140408 Query 159066 AATTTTGTGGCGCTCCACGGTGCCTTTGCCCTAATTGGTTTCATGCTTCGCCAGTTTGAA 159125 | |||||| || || || ||||| |||||| |||| || || ||| | || || |||||| Sbjct 140409 ACTTTTGTAGCTCTTCATGGTGCATTTGCCTTAATAGGCTTTATGTTACGACAATTTGAA 140468 Query 159126 CTGGCACG-TCTCATCGGTATCCGTCCCTACAATGCTATTGCGTTCTCTGGTCCTATTGC 159184 || || | ||| || | | ||||| || ||||| |||||||| ||||| |||||||| Sbjct 140469 CTTGCTAGATCTGTTCAAT-TACGTCCTTATAATGCAATTGCGTTTTCTGGACCTATTGC 140527 Query 159185 TGTTTTTGTCAGCGTCTTCCTTATCTACCCACTTGGTCAGTCCAGTTGGTTTTTCGCTCC 159244 ||||||||| || || ||||| || || | || || || |||||||||| || || Sbjct 140528 TGTTTTTGTATCTGTTTTTCTTATTTATCCTTTAGGACAATCAGGTTGGTTTTTTGCACC 140587 Query 159245 GTCCTTTGGGGTGGCCGCAATATTCAGGTTCCTACTCTTCCTACAAGGGTTCCACAATTG 159304 ||||| || || ||||| || || || | || || | ||||| || || || || Sbjct 140588 TAGTTTTGGTGTAGCTGCAATTTTTAGATTTATTCTTTTTTTTCAAGGCTTTCATAACTG 140647 Query 159305 GACACTAAACCCCTTCCATATGATGGGAGTTGCTGGTATCCTAGGTGGAGCACTTCTATC 159364 ||| ||||||| |||||||||||||| || ||||| | |||||| || ||| ||| Sbjct 140648 GACTTTAAACCCATTCCATATGATGGGTGTCGCTGGAGTTTTAGGTGCTGCTCTTTTATG 140707 Query 159365 TGCTATTCATGGGGTCACAGTTGAAAATACATTATACGAGGATGGAGAACAAGCAAACAC 159424 || ||||| || | || ||||| ||||| |||| || ||||| || |||||||| Sbjct 140708 CGCAATTCACGGTGCTACTGTTGAGAATACTTTATTTGAAGATGGTGATGGTGCAAACAC 140767 Query 159425 CTTTAAGGCGTTTGATTCAACTCA 159448 || || ||| | ||||||| Sbjct 140768 ATTCCGTGCTTTTAACCCAACTCA 140791 >seq467 Length=265627 Score = 141 bits (156), Expect = 1e-28 Identities = 131/166 (79%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 157873 AGCACCATGGCATTCAACCTCAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAG 157932 ||||| ||||| |||||| | || ||||| ||||| ||||| || | |||| |||| Sbjct 211267 AGCACTATGGCTTTCAACTTAAATGGTTTTAACTTTAACCAATCTGTTGTTGACAGTCAA 211208 Query 157933 GGTCGTGTGTTGAACACCTGGGCAGATGTCCTGAACCGCGCTGGTCTTGGTATGGAAGTT 157992 |||||||| | ||||| ||||| ||| | | ||||| ||| ||||||||||||||| Sbjct 211207 GGTCGTGTAATTAACACTTGGGCTGATATTATCAACCGTGCTAACCTTGGTATGGAAGTT 211148 Query 157993 ATGCATGAGCGTAACGCACACAACTTCCCACTGGATCTTGCTGCTG 158038 |||||||| |||||||| ||||||||||| || || | ||||||| Sbjct 211147 ATGCATGAACGTAACGCTCACAACTTCCCTCTAGACTTAGCTGCTG 211102 >seq3282 Length=366234 Score = 127 bits (140), Expect = 2e-24 Identities = 129/168 (77%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 157846 GGCATCTGGTTCACTGCACTGGGCGTAAGCACCATGGCATTCAACCTCAACGGTTTCAAC 157905 || || ||||| ||||| | || | ||||| ||||| |||||| | || ||||| ||| Sbjct 190886 GGTATTTGGTTTACTGCTTTAGGTATCAGCACTATGGCTTTCAACTTAAATGGTTTTAAC 190945 Query 157906 TTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGAACACCTGGGCAGATGTCCTG 157965 || ||||| || | |||| |||| |||||||| | ||||| ||||| ||| | | Sbjct 190946 TTTAACCAATCTGTTGTTGACAGTCAAGGTCGTGTAATTAACACTTGGGCTGATATTATC 191005 Query 157966 AACCGCGCTGGTCTTGGTATGGAAGTTATGCATGAGCGTAACGCACAC 158013 ||||| ||| ||||||||||||||||||||||| |||||||| ||| Sbjct 191006 AACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAACGCTCAC 191053 >seq3792 Length=366655 Score = 123 bits (136), Expect = 3e-23 Identities = 112/141 (79%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 157404 TTACCGTTTAGGTATGCGCCCCTGGATCTGTGTTGCCTACTCGGCACCAGTCGCTGCTGC 157463 |||||||||||||||||| || ||||| |||||| || || || ||||| |||||||| Sbjct 281814 TTACCGTTTAGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCAGTTGCTGCTGC 281873 Query 157464 GAGTGCAGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCCGATGCTATGCCTCT 157523 | ||| || ||| | |||| ||| | |||||||| |||||| || | ||||||| | Sbjct 281874 TACTGCTGTTTTCTTGATCTACCCTATTGGTCAAGGAAGTTTCTCAGACGGTATGCCTTT 281933 Query 157524 TGGTATCTCTGGTACTTTTAA 157544 ||||||||||||||||| || Sbjct 281934 AGGTATCTCTGGTACTTTCAA 281954 >seq3761 Length=231418 Score = 116 bits (128), Expect = 4e-21 Identities = 109/139 (78%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 157205 CTGGTTCTCTCATGTATGGCAACAACATCATCTCTGGTGCAGTTGTTCCTTCTTCAAACG 157264 |||||||||| | || || || |||||||| |||||||| || ||||| | || | Sbjct 108177 CTGGTTCTCTTCTTTACGGAAATAACATCATTTCTGGTGCTATTATTCCTACCTCTGCAG 108236 Query 157265 CAATCGGTCTTCACTTCTACCCCATCTGGGAAGCAGCATCACTTGATGAGTGGCTTTACA 157324 | |||||| | ||||||||||| || |||||||| || || ||||||| ||| | |||| Sbjct 108237 CTATCGGTTTACACTTCTACCCTATTTGGGAAGCTGCTTCTGTTGATGAATGGTTGTACA 108296 Query 157325 ACGGTGGTCCTTTCCAACT 157343 |||||||||||| | |||| Sbjct 108297 ACGGTGGTCCTTACGAACT 108315 >seq164 Length=700310 Score = 113 bits (124), Expect = 5e-20 Identities = 131/177 (74%), Gaps = 0/177 (0%) Strand=Plus/Plus Query 159606 AATCTTCGTGCTTACGATTTCGTGAGTCAAGAGATCAGAGCAGCAGAAGATCCAGAATTT 159665 ||| | ||||| |||||||| || ||||| || | |||||||| |||||||||||| Sbjct 563857 AATTTACGTGCCTACGATTTTGTTTCCCAAGAAATTCGTGCAGCAGAGGATCCAGAATTT 563916 Query 159666 GAAACGTTCTACACCAAGAACATTCTTCTGAATGAAGGACTACGTGCTTGGTTGGCACCT 159725 ||||| || || || || || ||| | | |||||||| | | |||||| ||||| || Sbjct 563917 GAAACTTTTTATACAAAAAATATTTTATTAAATGAAGGTATTAGAGCTTGGATGGCAGCT 563976 Query 159726 GCTGATCAACCCCATGAAAACTTCATCTTCCCAGAAGAAGTTCTACCAAGAGGTAAC 159782 ||||| || |||||||| | | |||||||| || ||||| ||| | || ||| Sbjct 563977 CAAGATCAGCCTCATGAAAATCTTGTATTCCCAGAGGAGGTTCTGCCACGTGGAAAC 564033 >seq1308 Length=500924 Score = 104 bits (114), Expect = 3e-17 Identities = 89/110 (81%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 157929 TCAGGGTCGTGTGTTGAACACCTGGGCAGATGTCCTGAACCGCGCTGGTCTTGGTATGGA 157988 ||| |||||||| | ||||| ||||| ||| | | ||||| ||| ||||||||||| Sbjct 59770 TCAAGGTCGTGTAATTAACACTTGGGCTGATATTATCAACCGTGCTAACCTTGGTATGGA 59711 Query 157989 AGTTATGCATGAGCGTAACGCACACAACTTCCCACTGGATCTTGCTGCTG 158038 |||||||||||| |||||||| ||||||||||| || || | ||||||| Sbjct 59710 AGTTATGCATGAACGTAACGCTCACAACTTCCCTCTAGACTTAGCTGCTG 59661 >seq595 Length=533780 Score = 98.7 bits (108), Expect = 1e-15 Identities = 119/162 (73%), Gaps = 0/162 (0%) Strand=Plus/Minus Query 159581 TATTGGCATTATTGGTCTTGCTCTCAATCTTCGTGCTTACGATTTCGTGAGTCAAGAGAT 159640 |||||| || | ||| | ||| | ||| | ||||| |||||||| || ||||| || Sbjct 284345 TATTGGGGTTGTAGGTTTAGCTTTAAATTTACGTGCCTACGATTTTGTTTCCCAAGAAAT 284286 Query 159641 CAGAGCAGCAGAAGATCCAGAATTTGAAACGTTCTACACCAAGAACATTCTTCTGAATGA 159700 | |||||||| ||||||||||||||||| || || || || || ||| | | ||||| Sbjct 284285 TCGTGCAGCAGAGGATCCAGAATTTGAAACTTTTTATACAAAAAATATTTTATTAAATGA 284226 Query 159701 AGGACTACGTGCTTGGTTGGCACCTGCTGATCAACCCCATGA 159742 ||| | | |||||| ||||| || ||||| || ||||| Sbjct 284225 AGGTATTAGAGCTTGGATGGCAGCTCAAGATCAGCCTCATGA 284184 >seq1921 Length=72791 Score = 84.2 bits (92), Expect = 2e-11 Identities = 55/61 (90%), Gaps = 0/61 (0%) Strand=Plus/Plus Query 157978 CTTGGTATGGAAGTTATGCATGAGCGTAACGCACACAACTTCCCACTGGATCTTGCTGCT 158037 ||||||||||||||||||||||| |||||||| ||||||||||| ||||| | |||||| Sbjct 54767 CTTGGTATGGAAGTTATGCATGAACGTAACGCTCACAACTTCCCTCTGGACTTAGCTGCT 54826 Query 158038 G 158038 | Sbjct 54827 G 54827 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 545245402538960