Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marchantia_20polymorpha_20subsp._20ruderalis_20[genbank_20GCA_5F0016 41455.1_202016-05-10] 4,137 sequences; 205,718,403 total letters Query= NC_023587.1 Length=189311 Score E Sequences producing significant alignments: (Bits) Value seq2878 253 2e-62 seq3792 109 7e-19 seq3761 95.1 1e-14 >seq2878 Length=397857 Score = 253 bits (280), Expect = 2e-62 Identities = 348/484 (72%), Gaps = 2/484 (0%) Strand=Plus/Plus Query 179109 TAACTTTCTTACGGCAGCTGTCTCGACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCT 179168 ||| ||| | || || ||||| || || || || || | | | ||||||| | || | Sbjct 140288 TAATTTTTTAACTGCCGCTGTTTCTACTCCAGCAAATAGTTTAGCTCATTCTTTACTATT 140347 Query 179169 ACTTTGGGGTCCTGAGTCTCAGGGGAATTTCCAGCGGTGGTGCCAACTTGGGGGACTATG 179228 | | ||||| ||||| | || || |||| || ||||||||| | || || |||| Sbjct 140348 ATTATGGGGACCTGAAGCACAAGGTGATTTTACTCGTTGGTGCCAATTAGGTGGTTTATG 140407 Query 179229 GAATTTCGTGGCTCTCCACGGTGCCTTCGCCCTAATTGGATTCATGCTTCGTCAGTTTGA 179288 || ||| || ||||| || ||||| || ||| |||| || || ||| | || || ||||| Sbjct 140408 GACTTTTGTAGCTCTTCATGGTGCATTTGCCTTAATAGGCTTTATGTTACGACAATTTGA 140467 Query 179289 ACTGGCACG-TCTCATCGGTATCCGTCCTTACAATGCGATTGCTTTTACTGGTCCTATTG 179347 ||| || | ||| || | | |||||||| ||||| ||||| ||| |||| ||||||| Sbjct 140468 ACTTGCTAGATCTGTTCAAT-TACGTCCTTATAATGCAATTGCGTTTTCTGGACCTATTG 140526 Query 179348 CCGTATTCGTTAGTGTATTTCTCATCTACCCACTTGGACAATCCAGTTGGTTCTTTGCGC 179407 | || || || ||| ||||| || || || | |||||||| ||||||| ||||| | Sbjct 140527 CTGTTTTTGTATCTGTTTTTCTTATTTATCCTTTAGGACAATCAGGTTGGTTTTTTGCAC 140586 Query 179408 CATCGTTTGGTGTTGCGGCGATCTTTAGATTCCTACTTTTCTTACAAGGTTTCCACAACT 179467 | |||||||| || || || |||||||| | ||||| || ||||| || || |||| Sbjct 140587 CTAGTTTTGGTGTAGCTGCAATTTTTAGATTTATTCTTTTTTTTCAAGGCTTTCATAACT 140646 Query 179468 GGACACTCAACCCCTTTCACATGATGGGAGTTGCAGGTATCCTGGGTGGTGCTCTGCTCT 179527 |||| | ||||| || || |||||||| || || || | | |||| |||||| | | Sbjct 140647 GGACTTTAAACCCATTCCATATGATGGGTGTCGCTGGAGTTTTAGGTGCTGCTCTTTTAT 140706 Query 179528 CTGCTATTCATGGAGTAACTGTAGAGAATACATTGTATGAAGATGGAGAACAAGCAAACA 179587 || ||||| || | ||||| |||||||| || | ||||||||| || ||||||| Sbjct 140707 GCGCAATTCACGGTGCTACTGTTGAGAATACTTTATTTGAAGATGGTGATGGTGCAAACA 140766 Query 179588 CATT 179591 |||| Sbjct 140767 CATT 140770 >seq3792 Length=366655 Score = 109 bits (120), Expect = 7e-19 Identities = 121/159 (76%), Gaps = 2/159 (1%) Strand=Plus/Plus Query 177912 TACCGTCTAGGTATGCGCCCCTGGATCTGTGTTGCATACTCTGCACCTGTTGCAGCAGCA 177971 |||||| |||||||||| || ||||| ||||||||| || || || ||||| || || Sbjct 281815 TACCGTTTAGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCAGTTGCTGCTGCT 281874 Query 177972 TCCGCAGTCTTTCTAG-TCTATCCTTTCGGTCAAGGTTCATTCTCCGATGCTATGCCTCT 178030 | || || ||||| | |||| ||| | |||||||| ||||| || | ||||||| | Sbjct 281875 ACTGCTGT-TTTCTTGATCTACCCTATTGGTCAAGGAAGTTTCTCAGACGGTATGCCTTT 281933 Query 178031 TGGTATCTCTGGTACTTTTAACTACATGCTTGTATTCCA 178069 ||||||||||||||||| || | |||| ||| |||| Sbjct 281934 AGGTATCTCTGGTACTTTCAATTTCATGACTGTTCTCCA 281972 >seq3761 Length=231418 Score = 95.1 bits (104), Expect = 1e-14 Identities = 108/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 177706 CCGTCGCTGGTTCACTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTACCATCTT 177765 |||| ||||||| || | || || || |||||||| |||||||| || | || | | Sbjct 108171 CCGTATCTGGTTCTCTTCTTTACGGAAATAACATCATTTCTGGTGCTATTATTCCTACCT 108230 Query 177766 CCAACGCAATTGGTCTTCACTTCTATCCCATCTGGGAAGCCGCATCACTTGATGAGTGGC 177825 | || || ||| | |||||||| || || |||||||| || || ||||||| ||| Sbjct 108231 CTGCAGCTATCGGTTTACACTTCTACCCTATTTGGGAAGCTGCTTCTGTTGATGAATGGT 108290 Query 177826 TGTATAACGGTGGTCCTTTCCAACT 177850 |||| ||||||||||||| | |||| Sbjct 108291 TGTACAACGGTGGTCCTTACGAACT 108315 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 605635879434920