Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marchantia_20polymorpha_20subsp._20ruderalis_20[genbank_20GCA_5F0016 41455.1_202016-05-10] 4,137 sequences; 205,718,403 total letters Query= NC_023607.1 Length=53396 Score E Sequences producing significant alignments: (Bits) Value seq2905 80.6 9e-11 >seq2905 Length=1000 Score = 80.6 bits (88), Expect = 9e-11 Identities = 93/123 (76%), Gaps = 2/123 (2%) Strand=Plus/Plus Query 34137 CGTGTTCCAGCACCGACTCATGGCCGACCTCGAGGATGTGCGCGAGGTAGTCGTCGTTTC 34196 |||| || ||||| || || |||||||| |||||||| || ||| | ||||| | Sbjct 579 CGTGCTCGAGCACGGAGAGGTGCCCGACCTCCAGGATGTGGCGGATGTACCCCTCGTT-C 637 Query 34197 GT-GCTGTCTTCGGGTTGGGACGGTTGAACGACCGGTAGCAGTTGCGACCGGCGAACTCA 34255 || || ||||||||||| || ||| ||||| |||||||| ||| ||||||||||| Sbjct 638 GTCGCCGTCTTCGGGTTCGGCTTGTTCCACGACTGGTAGCAGGCGCGGCCGGCGAACTCC 697 Query 34256 GCG 34258 ||| Sbjct 698 GCG 700 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 170737211802252