Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marchantia_20polymorpha_20subsp._20ruderalis_20[genbank_20GCA_5F0016 41455.1_202016-05-10] 4,137 sequences; 205,718,403 total letters Query= NC_023609.1 Length=46739 Score E Sequences producing significant alignments: (Bits) Value seq2905 89.7 2e-13 >seq2905 Length=1000 Score = 89.7 bits (98), Expect = 2e-13 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 32329 CGTGCTCCAGCACGGACTCGTGGCCGACCTTCAGGATGTGGGCCAGGTAGTCCTCGTTCT 32388 ||||||| |||||||| ||| ||||||| |||||||||| | ||| |||||||| Sbjct 579 CGTGCTCGAGCACGGAGAGGTGCCCGACCTCCAGGATGTGGCGGATGTACCCCTCGTTCG 638 Query 32389 CGGCCGTCTTCGGGTTCGGCCGGTGGAAGCTGCGGTAGCAGTTCCGGCCCGCGAACTCCG 32448 |||||||||||||||||| || | |||||||| ||||| |||||||||| Sbjct 639 TCGCCGTCTTCGGGTTCGGCTTGTTCCACGACTGGTAGCAGGCGCGGCCGGCGAACTCCG 698 Query 32449 CG 32450 || Sbjct 699 CG 700 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 149435858322594