Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marchantia_20polymorpha_20subsp._20ruderalis_20[genbank_20GCA_5F0016 41455.1_202016-05-10] 4,137 sequences; 205,718,403 total letters Query= NC_023614.1 Length=43153 Score E Sequences producing significant alignments: (Bits) Value seq899 109 2e-19 >seq899 Length=1674 Score = 109 bits (120), Expect = 2e-19 Identities = 175/251 (70%), Gaps = 3/251 (1%) Strand=Plus/Plus Query 28510 GCAATAGAGGCCCGAGTAATTGCCTGGTTGGCGAATGAAACTTGGCGAATGGATGTATTT 28569 || || |||||||| || ||||||||| |||| | || |||||| |||| || ||| Sbjct 414 GCCATTGAGGCCCGCGTGATTGCCTGGCTGGCTCAGGAGCTTTGGCGCCTGGAGGTGTTT 473 Query 28570 CGATCACATGGTAAGATATACGAGGCCTCGGCGTCTCAGATGTTTGGAGTGCCTATCGAA 28629 | | || || |||||||||||||| || || ||||| |||||||| ||||| | || Sbjct 474 GCAACCCACGGCAAGATATACGAGGCGTCTGCATCTCAAATGTTTGGCGTGCCGCTTGAG 533 Query 28630 AAAATAGACAAATCCACCGAGGAAGGTTCGGCACTTAGGAATAAAGGAAAAGTCGCAGAA 28689 || | ||| || | |||| | | || ||| | || || |||||||| || Sbjct 534 CGGATTAAGAAAGGCAACCCGGAA---TATGAGCTCAGGCAAAAGGGCAAAGTCGCGGAG 590 Query 28690 CTTGCCTTGGGTTACCAAGGGGCGTTGGGTGCACTTAAACAAATGGGTGGCGAAGCCATG 28749 || |||||||| |||||||||| | ||| || | | |||||| | | | |||| Sbjct 591 CTGGCCTTGGGCTACCAAGGGGGATCGGGCGCTTTGATTGCAATGGGAGCCCTTGACATG 650 Query 28750 GGGCTTTCAGA 28760 ||||| || || Sbjct 651 GGGCTGTCGGA 661 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 137961222063310