Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marchantia_20polymorpha_20subsp._20ruderalis_20[genbank_20GCA_5F0016 41455.1_202016-05-10] 4,137 sequences; 205,718,403 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq2226 149 5e-30 seq2334 114 1e-19 seq2642 102 6e-16 seq897 102 6e-16 >seq2226 Length=1142962 Score = 149 bits (164), Expect = 5e-30 Identities = 680/1060 (64%), Gaps = 34/1060 (3%) Strand=Plus/Plus Query 281432 ACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTC 281491 ||||| | ||||| ||||| || | || || |||| ||||| || || ||||| Sbjct 211380 ACATTCAATATACCGTTGGCGTCAATGTCGAAGCAGACTGTGATTTGGGGCACGCCTCTG 211439 Query 281492 TGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAAT 281551 | ||||| ||||| || || | |||| | || || || ||||| | || Sbjct 211440 GGTGCAGGGGGGATGCCAGACAGCTCAAATTTCCCGAGGAGGTTGTTATCCCTCGT---- 211495 Query 281552 TTTCGT----TCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGT 281607 | |||| || |||||| | | ||| || ||| ||| ||| || ||||| || || Sbjct 211496 TCTCGTCCTCTCTCCCTCGTACACTTGAATGAGCACTCCAGGTTGGTTGTCTGAGTATGT 211555 Query 281608 TGTAAATACTCTGGATTTTTTACAAGG-AATTGTTGTGTTTCTATCAATAATATTGGTCA 281666 | || || ||| || | | || ||| || ||||| || ||| | | |||| Sbjct 211556 GGAGAAGAC-CTGTTCCTTCTTCGTGGGAATGGTGGTGTTCCTCGGAATTAGAACAGTCA 211614 Query 281667 TAATACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATAT 281726 | | || || || || || | ||||||||| || || |||||||| | || | | | Sbjct 211615 TTACTCCTCCGGCCGTCTCGAGACCAAGAGACAGGGGGGTGACATCCAAGAGCAACAAGT 211674 Query 281727 TTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATATG 281786 ||| | || || | | | ||| |||||||| || || | ||||| || || | Sbjct 211675 CTTGCACCTTCTCGTTACCCTCTCCAGACAGAATAGCAGCCTGCACGGCAGCTCCGTAAG 211734 Query 281787 CAACAGCTTCATCAGGATTAA--CAGTTTCATTTAGTTTTTTACCATTGAAAAAATTTGA 281844 |||| ||||| || || || | | || || || | || || ||||| |||| | Sbjct 211735 CAACGGCTTCGTCGGGGTTGATGCTCTTGCAG--AGCTCCTTGCCGTTGAAGAAATCTTG 211792 Query 281845 AAGAAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCAC 281904 || | ||| ||||| || ||||| | ||||| || || | || | || || | Sbjct 211793 CAGCAATTGCTGAACCTTCGGGATACGGGTAGATCCGCCGACGAGAACGACGTCGTGAAT 211852 Query 281905 CTGTGAT-TTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCAGCTC 281963 | | | ||||||| || | || | |||||| |||||||| | || | Sbjct 211853 G-GAGCTCTTATCCATCTTGGCGTCTCTGAGGCATTTTTCTACGGGTTCCATACATTTCC 211911 Query 281964 TAAACAAGTC--TGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATTATAA-T 282020 | |||| || || || ||||||||||| |||| | || | || | || || | Sbjct 211912 TGAACATATCCATGTTCA--GTTCTTCGAATCTAGCACGGGTGATGGTTG-AGTAGAAGT 211968 Query 282021 CAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCAC 282080 | | |||||| | | || |||| ||||| || ||||||| | || || | | | Sbjct 211969 CGACACCTTCGTAGAGCGAGTCAATCTCAATAGTCGTTTGAGCAGTGGACGACAAAGTCC 212028 Query 282081 GTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAG-GCTTTTGCTGATTGATTCAAA 282139 || || | || || || || ||||||| |||| ||| | | ||| | | || Sbjct 212029 TCTTCGCTCTCTCGGCGGCAGTTCTCAGTCTTC-TAAGTGCTCGGG--GGTTGCTGCTAA 212085 Query 282140 TCTGTTT--TATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAA 282197 | | ||| | || || |||||||| || | ||| | | || || | || || | Sbjct 212086 TATCTTTCTTGTACTTCCTCTTGAACTCCTGCACAAAGTGGTTCACCAGCCTGTTGTCGA 212145 Query 282198 AATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTT 282257 | || |||||||| | | |||| ||| | |||||| | |||| ||||| || |||| Sbjct 212146 AGTCCTCACCTCCGAGATGGGTATCTCCGGCGGTAGCTTTCACTTCGAAAATACCTTCTT 212205 Query 282258 CAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCA 282317 | | || || || | |||||| || |||||||| | || ||||| | |||||| Sbjct 212206 CGATAGTCAGCAGGGACACATCAAAAGTACCACCACCGAGGTCGAAAATTAACACATTCT 212265 Query 282318 TTTCTTTGTC-----TTGGTTT-TTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTT 282371 | || | | ||| || || || ||||| || |||| |||||||||||| || | Sbjct 212266 TCTCACCGACGGAAGTTGCCTTCTTGTCGAGACCGTAGGCAATAGCAGCAGCAGTAGGCT 212325 Query 282372 CATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTC 282431 | |||||||||| || || || | || || || ||||||||| ||||| || || | Sbjct 212326 CGTTAATAATTCGCATGACGTTCAACCCCGCGATGACTCCTGCATCCTTAGTAGCCTGCC 212385 Query 282432 TTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGC 282471 | || |||||||| || || || || || || || || || Sbjct 212386 TCTGAGAATCGTTGAAGTAGGCTGGCACTGTGATGACAGC 212425 >seq2334 Length=378061 Score = 114 bits (126), Expect = 1e-19 Identities = 202/291 (69%), Gaps = 10/291 (3%) Strand=Plus/Plus Query 282191 TTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGT 282250 || || || |||||||||||||| | || | || | || || | || | ||||| Sbjct 146952 TTGTCGAAGTCTTCACCTCCCAAATGCGTGTCCCCGGCTGTGGCCTTGACCTCGAAAATA 147011 Query 282251 CCATCTTCAA--GAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAA 282308 || || || | | || ||||| ||||| || ||||| |||| ||| || |||| Sbjct 147012 CCTTCCTCGATGGTGAGCAAAGA--CACATCGAAAGTACCACCTCCCAAATCGAAGATAA 147069 Query 282309 GTACATTCATTTCTTTGTC-TTGG-----TTTTTATCAAGACCATACGCAAAAGCAGCAG 282362 |||| ||| | || | ||| || || || ||||| || |||| ||||||| Sbjct 147070 GTACGTTCTTCTCACCAACGCTGGTAGCCTTCTTGTCGAGACCGTAGGCAATGGCAGCAG 147129 Query 282363 CAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAG 282422 | || || || ||||| || |||| ||||| | ||| || || ||| ||||| |||| Sbjct 147130 CGGTAGGCTCGTTAATGATCCTCATGACATTCAAACCGGCGATGACTCCGGCATCCTTAG 147189 Query 282423 TGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCAT 282473 | ||||| ||||| |||||||| || || ||||| || |||| ||||||| Sbjct 147190 TAGCTTGCCTTTGAGAATCGTTGAAGTAAGCAGGGACGGTAACGACGGCAT 147240 Score = 100 bits (110), Expect = 2e-15 Identities = 135/188 (72%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 282692 AAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGGCTGCATCTCCAATCAGATGT 282751 |||| ||| ||||| || || | || | |||| ||||| |||||||| || || | Sbjct 147599 AAAACAGTGTTGGTGGGGTTCATGGCCACCTGATTCTTGGCGGCATCTCCGATAAGTCGC 147658 Query 282752 TCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAATA 282811 || || || || ||| || ||||| || || || || ||||| |||||||| || || Sbjct 147659 TCAGTGTCGGTGAATCCGACGTATGAAGGCGTGGTTCGGTTACCCTGATCATTGGCGATG 147718 Query 282812 ATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTTCCTAAATCAATA 282871 || ||||| | | | |||||||||||| |||||||| | || || || | ||| ||| Sbjct 147719 ATCTCAACACGATCGTGTTGCCATACACCAACACAACTGTAGGTGGTACCAAGATCGATA 147778 Query 282872 CCAATAGC 282879 || || || Sbjct 147779 CCGATCGC 147786 >seq2642 Length=355452 Score = 102 bits (112), Expect = 6e-16 Identities = 106/139 (76%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 432260 CACTAAATCAATGTCTGAAAGATTGAGAGGTAAAGAAGGTCGTATTAGAGGAAATTTGAT 432319 || ||| ||||| | | | | |||| | |||||||| ||||| ||||||||||||| Sbjct 223606 CATTAAGTCAATATGTCAGCGGTTGAAGGCCAAAGAAGGGCGTATCCGAGGAAATTTGAT 223665 Query 432320 GGGAAAGCGTGTCGATATGTCTGCACGTACAGTTATTACTTCTGATCCTAATATTGCTCT 432379 ||| |||||||| ||| | |||||||||||||| || || ||||||| ||||| | | Sbjct 223666 GGGCAAGCGTGTGGATTTTTCTGCACGTACAGTCATCACGCCTGATCCAAATATCAATAT 223725 Query 432380 CAATGAAGTTGGTGTTCCT 432398 ||||| |||| || ||| Sbjct 223726 TGATGAACTTGGAGTACCT 223744 >seq897 Length=979407 Score = 102 bits (112), Expect = 6e-16 Identities = 140/196 (71%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 282332 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 282391 || ||||| | |||||| | || | || ||||| |||||||| || || | | |||| Sbjct 887536 TTCTTATCCATACCATATGACAACGACGCTGCAGTCGGTTCATTGATGATACGAAGAACA 887477 Query 282392 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 282451 | || || || |||||||||||||| || || ||||| | ||||| ||| || |||||| Sbjct 887476 TCCAGCCCGGCTATTCTTCCTGCATCCTTGGTAGCTTGGCGTTGTGCATCATTGAAATAT 887417 Query 282452 GCAGGAACAGTAATAACGGCATCTGTTACTTCTTTTCCAATATAAGCGCTTGCTGTTTGT 282511 || || ||||| || || || | | |||| | ||||| |||| || || | Sbjct 887416 GCCGGCACAGTGATTACTGCTTTCGATACTGGTCGTCCAAGGTAAGATTCAGCAGTCTCC 887357 Query 282512 TTCATTTTACTTAAAA 282527 |||||||||| || || Sbjct 887356 TTCATTTTACCTAGAA 887341 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740427290782962