Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marchantia_20polymorpha_20subsp._20ruderalis_20[genbank_20GCA_5F0016 41455.1_202016-05-10] 4,137 sequences; 205,718,403 total letters Query= NC_025456.1 Length=46547 Score E Sequences producing significant alignments: (Bits) Value seq467 118 3e-22 seq3282 109 2e-19 seq3761 104 7e-18 seq2371 93.3 1e-14 seq1308 93.3 1e-14 >seq467 Length=265627 Score = 118 bits (130), Expect = 3e-22 Identities = 118/153 (77%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 20330 ACAATGGCGTTTAATCTGAACGGTTTCAACTTTAACCAGTCCCTTCTCGACAACAATGGT 20389 || ||||| || || | || ||||| ||||||||||| || || | |||| | ||| Sbjct 211264 ACTATGGCTTTCAACTTAAATGGTTTTAACTTTAACCAATCTGTTGTTGACAGTCAAGGT 211205 Query 20390 CGTGTCATTGATACTTGGGCTGACATTCTCAATCGTGCTAATCTCGGGTTTGAGGTGATG 20449 ||||| ||| | ||||||||||| ||| |||| |||||||| || || | || || ||| Sbjct 211204 CGTGTAATTAACACTTGGGCTGATATTATCAACCGTGCTAACCTTGGTATGGAAGTTATG 211145 Query 20450 CATGAACGGAATGCTCATAACTTCCCACTTGAC 20482 |||||||| || ||||| |||||||| || ||| Sbjct 211144 CATGAACGTAACGCTCACAACTTCCCTCTAGAC 211112 >seq3282 Length=366234 Score = 109 bits (120), Expect = 2e-19 Identities = 125/168 (74%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 20299 AGGGATTTGGTTCGCTGCCTTGGGCGTTTCTACAATGGCGTTTAATCTGAACGGTTTCAA 20358 ||| |||||||| |||| || || | || ||||| || || | || ||||| || Sbjct 190885 AGGTATTTGGTTTACTGCTTTAGGTATCAGCACTATGGCTTTCAACTTAAATGGTTTTAA 190944 Query 20359 CTTTAACCAGTCCCTTCTCGACAACAATGGTCGTGTCATTGATACTTGGGCTGACATTCT 20418 ||||||||| || || | |||| | |||||||| ||| | ||||||||||| ||| | Sbjct 190945 CTTTAACCAATCTGTTGTTGACAGTCAAGGTCGTGTAATTAACACTTGGGCTGATATTAT 191004 Query 20419 CAATCGTGCTAATCTCGGGTTTGAGGTGATGCATGAACGGAATGCTCA 20466 ||| |||||||| || || | || || ||||||||||| || ||||| Sbjct 191005 CAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAACGCTCA 191052 >seq3761 Length=231418 Score = 104 bits (114), Expect = 7e-18 Identities = 113/148 (76%), Gaps = 4/148 (3%) Strand=Plus/Plus Query 19653 CCGTATCCGGTAGCCTTCTTTATGGAAACAACATCATATCGGGAGCCGTCGTTCCGAGCA 19712 ||||||| ||| |||||||| ||||| |||||||| || || || | |||| | | Sbjct 108171 CCGTATCTGGTTCTCTTCTTTACGGAAATAACATCATTTCTGGTGCTATTATTCCTACCT 108230 Query 19713 --GCAATGCCATCGGACTACACTTCTACCCAATTTGGGAAGCTAGTTCACTTGATGAATG 19770 ||| || ||||| ||||||||||||| |||||||||||| ||| |||||||||| Sbjct 108231 CTGCA--GCTATCGGTTTACACTTCTACCCTATTTGGGAAGCTGCTTCTGTTGATGAATG 108288 Query 19771 GCTCTACAACGGGGGACCGTTCCAACTT 19798 | | |||||||| || || | | ||||| Sbjct 108289 GTTGTACAACGGTGGTCCTTACGAACTT 108316 >seq2371 Length=186017 Score = 93.3 bits (102), Expect = 1e-14 Identities = 81/101 (80%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 19598 TTCATTATTGCATTCATTGCGGCTCCACCAGTTGACATTGATGGCATCCGCGAACCCGTA 19657 ||||||||||| || ||||| ||||| || || || ||||| || ||||| ||||| ||| Sbjct 41006 TTCATTATTGCTTTTATTGCAGCTCCTCCTGTAGATATTGACGGTATCCGTGAACCTGTA 41065 Query 19658 TCCGGTAGCCTTCTTTATGGAAACAACATCATATCGGGAGC 19698 || ||| |||||||| ||||| |||||||| || || || Sbjct 41066 TCTGGTTCTCTTCTTTACGGAAATAACATCATTTCTGGTGC 41106 >seq1308 Length=500924 Score = 93.3 bits (102), Expect = 1e-14 Identities = 78/96 (81%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 20387 GGTCGTGTCATTGATACTTGGGCTGACATTCTCAATCGTGCTAATCTCGGGTTTGAGGTG 20446 |||||||| ||| | ||||||||||| ||| |||| |||||||| || || | || || Sbjct 59766 GGTCGTGTAATTAACACTTGGGCTGATATTATCAACCGTGCTAACCTTGGTATGGAAGTT 59707 Query 20447 ATGCATGAACGGAATGCTCATAACTTCCCACTTGAC 20482 ||||||||||| || ||||| |||||||| || ||| Sbjct 59706 ATGCATGAACGTAACGCTCACAACTTCCCTCTAGAC 59671 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 148821488506146