Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marchantia_20polymorpha_20subsp._20ruderalis_20[genbank_20GCA_5F0016 41455.1_202016-05-10] 4,137 sequences; 205,718,403 total letters Query= NC_025461.1 Length=45871 Score E Sequences producing significant alignments: (Bits) Value seq467 131 5e-26 seq3282 123 7e-24 seq1308 100 8e-17 seq3761 89.7 2e-13 seq2371 84.2 6e-12 >seq467 Length=265627 Score = 131 bits (144), Expect = 5e-26 Identities = 120/152 (79%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 29458 ACAATGGCGTTTAATCTGAACGGTTTTAACTTTAACCAGTCGCTTCTCGACAACAATGGT 29517 || ||||| || || | || ||||||||||||||||| || || | |||| | ||| Sbjct 211264 ACTATGGCTTTCAACTTAAATGGTTTTAACTTTAACCAATCTGTTGTTGACAGTCAAGGT 211205 Query 29518 CGTGTCATTAATACTTGGGCTGATGTTCTCAATCGCGCTAACCTCGGCTTTGAAGTAATG 29577 ||||| ||||| |||||||||||| || |||| || |||||||| || | ||||| ||| Sbjct 211204 CGTGTAATTAACACTTGGGCTGATATTATCAACCGTGCTAACCTTGGTATGGAAGTTATG 211145 Query 29578 CATGAGCGTAATGCTCATAACTTCCCACTTGA 29609 ||||| ||||| ||||| |||||||| || || Sbjct 211144 CATGAACGTAACGCTCACAACTTCCCTCTAGA 211113 >seq3282 Length=366234 Score = 123 bits (136), Expect = 7e-24 Identities = 128/168 (76%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 29427 AGGGATTTGGTTCGCTGCCTTGGGCGTTTCTACAATGGCGTTTAATCTGAACGGTTTTAA 29486 ||| |||||||| |||| || || | || ||||| || || | || |||||||| Sbjct 190885 AGGTATTTGGTTTACTGCTTTAGGTATCAGCACTATGGCTTTCAACTTAAATGGTTTTAA 190944 Query 29487 CTTTAACCAGTCGCTTCTCGACAACAATGGTCGTGTCATTAATACTTGGGCTGATGTTCT 29546 ||||||||| || || | |||| | |||||||| ||||| |||||||||||| || | Sbjct 190945 CTTTAACCAATCTGTTGTTGACAGTCAAGGTCGTGTAATTAACACTTGGGCTGATATTAT 191004 Query 29547 CAATCGCGCTAACCTCGGCTTTGAAGTAATGCATGAGCGTAATGCTCA 29594 ||| || |||||||| || | ||||| |||||||| ||||| ||||| Sbjct 191005 CAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAACGCTCA 191052 >seq1308 Length=500924 Score = 100 bits (110), Expect = 8e-17 Identities = 79/95 (83%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 29515 GGTCGTGTCATTAATACTTGGGCTGATGTTCTCAATCGCGCTAACCTCGGCTTTGAAGTA 29574 |||||||| ||||| |||||||||||| || |||| || |||||||| || | ||||| Sbjct 59766 GGTCGTGTAATTAACACTTGGGCTGATATTATCAACCGTGCTAACCTTGGTATGGAAGTT 59707 Query 29575 ATGCATGAGCGTAATGCTCATAACTTCCCACTTGA 29609 |||||||| ||||| ||||| |||||||| || || Sbjct 59706 ATGCATGAACGTAACGCTCACAACTTCCCTCTAGA 59672 >seq3761 Length=231418 Score = 89.7 bits (98), Expect = 2e-13 Identities = 102/135 (76%), Gaps = 4/135 (3%) Strand=Plus/Plus Query 28794 TCTTCTCTATGGAAACAACATCATATCGGGAGCCGTCGTACCGAGCA--GCAATGCCATC 28851 |||||| || ||||| |||||||| || || || | | || | | ||| || ||| Sbjct 108184 TCTTCTTTACGGAAATAACATCATTTCTGGTGCTATTATTCCTACCTCTGCA--GCTATC 108241 Query 28852 GGACTACACTTCTACCCAATTTGGGAAGCTAATTCACTTGATGAATGGCTCTACAACGGG 28911 || ||||||||||||| |||||||||||| ||| ||||||||||| | |||||||| Sbjct 108242 GGTTTACACTTCTACCCTATTTGGGAAGCTGCTTCTGTTGATGAATGGTTGTACAACGGT 108301 Query 28912 GGACCGTTCCAACTT 28926 || || | | ||||| Sbjct 108302 GGTCCTTACGAACTT 108316 >seq2371 Length=186017 Score = 84.2 bits (92), Expect = 6e-12 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 28726 TTCATTATTGCATTCATTGCGGCACCACCAGTTGACATTGATGGCATCCGCGAACCTGTC 28785 ||||||||||| || ||||| || || || || || ||||| || ||||| |||||||| Sbjct 41006 TTCATTATTGCTTTTATTGCAGCTCCTCCTGTAGATATTGACGGTATCCGTGAACCTGTA 41065 Query 28786 GCTGGAAGTCTTCTCTATGGAAACAACATCATATCGGGAGC 28826 |||| |||||| || ||||| |||||||| || || || Sbjct 41066 TCTGGTTCTCTTCTTTACGGAAATAACATCATTTCTGGTGC 41106 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146658394777402