Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marchantia_20polymorpha_20subsp._20ruderalis_20[genbank_20GCA_5F0016 41455.1_202016-05-10] 4,137 sequences; 205,718,403 total letters Query= NC_025464.1 Length=44147 Score E Sequences producing significant alignments: (Bits) Value seq467 152 1e-32 seq3282 143 8e-30 seq3761 98.7 3e-16 seq1308 98.7 3e-16 seq2371 93.3 1e-14 >seq467 Length=265627 Score = 152 bits (168), Expect = 1e-32 Identities = 131/162 (81%), Gaps = 0/162 (0%) Strand=Plus/Minus Query 19546 AGCACCATGGCATTCAACTTGAATGGCTTTAACTTTAACCAGTCCCTTCTTGACAACAAT 19605 ||||| ||||| |||||||| ||||| |||||||||||||| || || |||||| | Sbjct 211267 AGCACTATGGCTTTCAACTTAAATGGTTTTAACTTTAACCAATCTGTTGTTGACAGTCAA 211208 Query 19606 GGTCGTGTCATTGATACTTGGGCTGACATTCTCAATCGTGCTAACCTCGGCTTTGAGGTA 19665 |||||||| ||| | ||||||||||| ||| |||| ||||||||||| || | || || Sbjct 211207 GGTCGTGTAATTAACACTTGGGCTGATATTATCAACCGTGCTAACCTTGGTATGGAAGTT 211148 Query 19666 ATGCACGAACGTAATGCTCATAACTTCCCACTTGATTTGGCT 19707 ||||| |||||||| ||||| |||||||| || || || ||| Sbjct 211147 ATGCATGAACGTAACGCTCACAACTTCCCTCTAGACTTAGCT 211106 >seq3282 Length=366234 Score = 143 bits (158), Expect = 8e-30 Identities = 132/167 (79%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 19519 GGCATTTGGTTTGCCGCCCTTGGGGTAAGCACCATGGCATTCAACTTGAATGGCTTTAAC 19578 || ||||||||| | || | || | ||||| ||||| |||||||| ||||| |||||| Sbjct 190886 GGTATTTGGTTTACTGCTTTAGGTATCAGCACTATGGCTTTCAACTTAAATGGTTTTAAC 190945 Query 19579 TTTAACCAGTCCCTTCTTGACAACAATGGTCGTGTCATTGATACTTGGGCTGACATTCTC 19638 |||||||| || || |||||| | |||||||| ||| | ||||||||||| ||| || Sbjct 190946 TTTAACCAATCTGTTGTTGACAGTCAAGGTCGTGTAATTAACACTTGGGCTGATATTATC 191005 Query 19639 AATCGTGCTAACCTCGGCTTTGAGGTAATGCACGAACGTAATGCTCA 19685 || ||||||||||| || | || || ||||| |||||||| ||||| Sbjct 191006 AACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAACGCTCA 191052 >seq3761 Length=231418 Score = 98.7 bits (108), Expect = 3e-16 Identities = 104/135 (77%), Gaps = 4/135 (3%) Strand=Plus/Plus Query 18885 TCTTCTTTATGGAAACAACATCATATCGGGAGCCGTCGTTCCGAGCA--GCAATGCCATC 18942 ||||||||| ||||| |||||||| || || || | |||| | | ||| || ||| Sbjct 108184 TCTTCTTTACGGAAATAACATCATTTCTGGTGCTATTATTCCTACCTCTGCA--GCTATC 108241 Query 18943 GGACTACACTTCTACCCAATTTGGGAAGCTAATTCACTTGATGAATGGCTCTACAACGGG 19002 || ||||||||||||| |||||||||||| ||| ||||||||||| | |||||||| Sbjct 108242 GGTTTACACTTCTACCCTATTTGGGAAGCTGCTTCTGTTGATGAATGGTTGTACAACGGT 108301 Query 19003 GGACCGTTCCAACTT 19017 || || | | ||||| Sbjct 108302 GGTCCTTACGAACTT 108316 >seq1308 Length=500924 Score = 98.7 bits (108), Expect = 3e-16 Identities = 83/102 (81%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 19606 GGTCGTGTCATTGATACTTGGGCTGACATTCTCAATCGTGCTAACCTCGGCTTTGAGGTA 19665 |||||||| ||| | ||||||||||| ||| |||| ||||||||||| || | || || Sbjct 59766 GGTCGTGTAATTAACACTTGGGCTGATATTATCAACCGTGCTAACCTTGGTATGGAAGTT 59707 Query 19666 ATGCACGAACGTAATGCTCATAACTTCCCACTTGATTTGGCT 19707 ||||| |||||||| ||||| |||||||| || || || ||| Sbjct 59706 ATGCATGAACGTAACGCTCACAACTTCCCTCTAGACTTAGCT 59665 >seq2371 Length=186017 Score = 93.3 bits (102), Expect = 1e-14 Identities = 81/101 (80%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 18817 TTCATTATTGCCTTCATTGCTGCACCTCCTGTAGACATTGATGGCATCCGCGAGCCTGTT 18876 ||||||||||| || ||||| || ||||||||||| ||||| || ||||| || ||||| Sbjct 41006 TTCATTATTGCTTTTATTGCAGCTCCTCCTGTAGATATTGACGGTATCCGTGAACCTGTA 41065 Query 18877 GCAGGCAGTCTTCTTTATGGAAACAACATCATATCGGGAGC 18917 | || ||||||||| ||||| |||||||| || || || Sbjct 41066 TCTGGTTCTCTTCTTTACGGAAATAACATCATTTCTGGTGC 41106 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 141141865800546