Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marchantia_20polymorpha_20subsp._20ruderalis_20[genbank_20GCA_5F0016 41455.1_202016-05-10] 4,137 sequences; 205,718,403 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq487 107 2e-18 seq4017 98.7 9e-16 seq2625 91.5 1e-13 seq308 89.7 5e-13 >seq487 Length=466406 Score = 107 bits (118), Expect = 2e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 131915 ACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCG 131974 |||||||| | | ||||| ||||| ||||||||||| | |||||| ||||||| Sbjct 182990 ACCAAATGGAGAGTGGACTCCTTTTGGATGTTGTAGTCTGCGAGGGTACGACCATCTTCG 182931 Query 131975 AGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTA 132034 ||||| ||||| | |||| | | || ||||| ||||| ||||| || || || | Sbjct 182930 AGCTGCTTACCAGCGAAGATCAATCTTTGCTGATCAGGAGGAATGCCCTCCTTGTCCTGA 182871 Query 132035 ATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTA 132094 || || ||| | | || | ||| |||| ||||||||| | || | |||||| Sbjct 182870 ATCTTAGCTTTAACGTTGTCGATAGTGTCGGAGCTCTCCACTTCCAGAGTGATCGTTTTG 182811 Query 132095 CCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || ||||| ||||||| ||| |||||||| Sbjct 182810 CCGGTCAGCGTTTTTACGAAGATCTGCAT 182782 Score = 93.3 bits (102), Expect = 4e-14 Identities = 153/221 (69%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 131903 CGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTA 131962 |||| ||||| |||| ||| | | |||||||||||||||||||| ||| || ||| Sbjct 183553 CGCAGACGCAACACCAGATGCAACGTCGACTCTTTTTGAATGTTGTAATCGGCCAGTGTA 183494 Query 131963 CGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCT 132022 || |||||| ||||| || || | |||| | ||||| || || ||||| || || Sbjct 183493 CGACCATCTTCCAGCTGCTTGCCAGCGAAGATCAATCGCTGCTGGTCGGGAGGAATTCCC 183434 Query 132023 TCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACC 132082 || || || ||||| ||||| | || | || || | ||||||||| | Sbjct 183433 TCCTTGTCCTGGATTTTGGCTTTCACATTGTCGATGGTGTCAGAGCTCTCCACTTCCAGA 183374 Query 132083 GTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || | ||||| || |||||||| || | ||| || ||||| Sbjct 183373 GTGATGGTTTTCCCCGTCAGAGTCTTGACGAAGATTTGCAT 183333 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 131915 ACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCG 131974 |||||||| | | ||||| ||||| ||||||||||| | || || || ||| Sbjct 176788 ACCAAATGAAGAGTGGACTCCTTTTGGATGTTGTAGTCTGCAAGAGTTCGGCCGTCCTCG 176729 Query 131975 AGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTA 132034 ||||| ||||||| | |||| || | ||| || |||||||| || || || || || | Sbjct 176728 AGCTGCTTACCGGCAAAGATCAGCCTCTGCTGGTCTGGAGGAATTCCCTCCTTGTCCTGA 176669 Query 132035 ATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTA 132094 ||||| ||| | | || | ||||||| || ||||| | || | || ||| Sbjct 176668 ATTTTGGCTTTGACGTTATCAATGGTATCGGAGCTTTCTACTTCTAAAGTGATAGTCTTA 176609 Query 132095 CCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || || || ||||| | ||||||||||| Sbjct 176608 CCGGTGAGTGTTTTCACAAAAATCTGCAT 176580 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 131915 ACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCG 131974 |||||||| | | ||||| ||||| ||||||||||| | || || ||||||| Sbjct 182762 ACCAAATGGAGAGTGGACTCCTTTTGGATGTTGTAGTCTGCGAGAGTGCGGCCATCTTCG 182703 Query 131975 AGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTA 132034 ||||| ||||| | |||| || | ||| || ||||| || || ||||| || || Sbjct 182702 AGCTGCTTACCAGCGAAGATCAGCCTCTGCTGGTCTGGTGGAATCCCTTCCTTGTCCTGG 182643 Query 132035 ATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTA 132094 |||||| |||| | ||||| || |||| ||||| |||| || | ||| || Sbjct 182642 ATTTTTGCCTTCACGTTGTCCACGGTGTCGGAGCTTTCCACCTCGAGAGTGATCGTCTTT 182583 Query 132095 CCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || || || || || | ||| || ||||| Sbjct 182582 CCTGTGAGGGTCTTCACGAAGATTTGCAT 182554 >seq4017 Length=874442 Score = 98.7 bits (108), Expect = 9e-16 Identities = 138/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||| ||||| |||||||||||| || ||| | |||||||||||| || |||| Sbjct 473080 GACTCCTTTTGGATGTTGTAGTCGGCCAGGGTCCTTCCATCTTCGAGCTGCTTGCCGGCG 473021 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| | ||||| ||||||||||| || || || ||||| ||||| |||| Sbjct 473020 AAGATCAATCGCTGCTGATCTGGAGGAATACCCTCCTTATCTTGGATTTTAGTCTTCACA 472961 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | ||| || | |||||| || | || | || || || |||||||| || Sbjct 472960 TTGTCGATAGTGTCAGAACTCTCCACCTCCAAGGTTATAGTCTTGCCTGTCAGAGTCTTC 472901 Query 132110 ATGAAAATCTGCAT 132123 | |||||||||||| Sbjct 472900 ACGAAAATCTGCAT 472887 Score = 93.3 bits (102), Expect = 4e-14 Identities = 152/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 131905 CAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACG 131964 ||| ||||| || | ||| | | ||||| ||||| ||||| |||||| || || | Sbjct 473333 CAACCGCAACACAAGATGAAGAGTAGACTCCTTTTGGATGTTATAGTCGGCCAAAGTCCT 473274 Query 131965 CGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTC 132024 ||||||||||||||| || | |||| | ||||| || ||||| || |||||||| Sbjct 473273 GCCATCTTCGAGCTGTTTCCCAGCGAAGATCAATCGCTGCTGGTCTGGGGGAATGCCTTC 473214 Query 132025 TTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGT 132084 || || |||||| |||| | || | || |||| |||||| || | || Sbjct 473213 CTTGTCTTGAATTTTGGTCTTCACATTGTCGATGGTGTCGGAACTCTCCACCTCCAAGGT 473154 Query 132085 CAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 | || || || |||||||| || | |||||||||||| Sbjct 473153 GATGGTCTTGCCTGTCAGAGTCTTCACGAAAATCTGCAT 473115 >seq2625 Length=346021 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 131911 CAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATC 131970 ||| |||||||| | | | ||||| |||||||||||||||||| || |||||| || Sbjct 282003 CAAGACCAAATGGAGGGTAGACTCCTTTTGAATGTTGTAGTCGGCCAAGGTACGACCGTC 281944 Query 131971 TTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATC 132030 || || || || || | | | || | | ||| ||||||||||| |||||||| || || Sbjct 281943 CTCAAGTTGCTTTCCTGCAAAAATCAACCTCTGCTGATCTGGAGGGATGCCTTCCTTGTC 281884 Query 132031 GGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGT 132090 ||| || ||||| | || | || || | |||||| || | || | || Sbjct 281883 CTGAATCTTCGTTTTCACGTTGTCAATCGTGTCAGAGCTCTCCACCTCAAGAGTGATGGT 281824 Query 132091 TTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||||| |||| || || | ||||||||||| Sbjct 281823 CTTACCGGTCAATGTCTTCACAAAAATCTGCAT 281791 Score = 89.7 bits (98), Expect = 5e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 131915 ACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCG 131974 |||||||| | | | || || ||||| |||||||| ||| | || || |||||| Sbjct 281543 ACCAAATGCAAGGTAGATTCCTTTTGGATGTTGTAATCGGCGAGTGTCCGACCATCTTCA 281484 Query 131975 AGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTA 132034 |||||||| |||| | | || | | ||| || |||||||| || || || || || | Sbjct 281483 AGCTGTTTCCCGGCAAAAATCAATCTCTGCTGGTCTGGAGGAATTCCCTCCTTGTCTTGA 281424 Query 132035 ATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTA 132094 ||||| ||||| | || | || |||| ||| || || | || | ||| || Sbjct 281423 ATTTTGGTTTTCACATTGTCAATGGTGTCGGAACTCTCAACCTCCAAAGTAATCGTCTTG 281364 Query 132095 CCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||||||| ||||| | |||||||||||| Sbjct 281363 CCAGTCAAGGTTTTGACGAAAATCTGCAT 281335 Score = 82.4 bits (90), Expect = 7e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 131911 CAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATC 131970 |||||||||||| | | | || || ||||| |||||||||||| || || | | ||| Sbjct 281775 CAAAACCAAATGGAGGGTAGATTCCTTTTGGATGTTGTAGTCGGCCAACGTCCTCCCATC 281716 Query 131971 TTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATC 132030 || || || || |||| | | || | | ||| ||||||||||| |||||||| || || Sbjct 281715 CTCAAGTTGCTTTCCGGCAAAAATCAACCTCTGCTGATCTGGAGGGATGCCTTCCTTGTC 281656 Query 132031 GGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGT 132090 ||| || ||||| | || | || || | |||||| || | || | || Sbjct 281655 CTGAATCTTCGTTTTCACGTTATCAATCGTGTCAGAGCTCTCCACCTCAAGAGTTATGGT 281596 Query 132091 TTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || || || || ||||| | ||| || ||||| Sbjct 281595 CTTGCCGGTGAGGGTTTTAACGAAGATTTGCAT 281563 >seq308 Length=410546 Score = 89.7 bits (98), Expect = 5e-13 Identities = 103/136 (76%), Gaps = 2/136 (1%) Strand=Plus/Minus Query 51738 ACATTGCCCAAGTCGCCGACGTGGCGCATCGCCGCGTTCGGAGCGCCGTGGTCGCTGCCG 51797 || ||||||| ||| || ||||||||| | | | | |||||||||||| || | Sbjct 381332 ACGTTGCCCAGGTCTCCAGCGTGGCGCACCTCATCCTCGGGAGCGCCGTGGGT-CTTCTT 381274 Query 51798 GTGGGG-TTGAAGTGTTCGCCCGCCGACGTGCAGCCGTTGCTGGTGTCGCCGAATTCGTG 51856 || || |||||||| |||| |||| |||| || ||| ||||||||||||| ||||| Sbjct 381273 CTGCGGATTGAAGTGCGGCCCCGTCGACATGCACCCATTGGTGGTGTCGCCGAACTCGTG 381214 Query 51857 CACGTGGAATCCGTGC 51872 || |||||||||||| Sbjct 381213 CAAATGGAATCCGTGC 381198 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476586553243320