Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marchantia_20polymorpha_20subsp._20ruderalis_20[genbank_20GCA_5F0016 41455.1_202016-05-10] 4,137 sequences; 205,718,403 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq4017 102 7e-17 seq487 95.1 1e-14 seq4073 93.3 4e-14 seq2625 86.0 6e-12 >seq4017 Length=874442 Score = 102 bits (112), Expect = 7e-17 Identities = 161/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||||| | ||||| || ||||| || |||||| | ||||| | || || ||| | Sbjct 473343 ATGCAGATCTTTGTCAAGACATTGACTGGAAAAACCATCACTTTGGAGGTTGAAAGCTCA 473402 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 ||||| ||||| | || || ||| || ||||| |||||||| || ||||| ||| Sbjct 473403 GATACCATCGACAACGTGAAGACAAAGATCCAGGATAAGGAGGGTATTCCTCCCGACCAG 473462 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAA--TGTCAGCGATTACA 25352 || || | || | | ||| || || ||||| |||| | | | || ||| | || | Sbjct 473463 CAGCGATTGATCTTTGCCGGTAAGCAGCTCGAGGATGGTCGTACCTTGGCAG--ACTATA 473520 Query 25353 ATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 |||||||||| ||||| ||| | ||| | ||| || ||||||| ||||| Sbjct 473521 ATATTCAAAAGGAATCTACCTTGCATCTTGTGCTACGATTGAGGGGAGG 473569 >seq487 Length=466406 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||||| | || |||||||| | ||||| ||| ||||||| | ||||| || | | Sbjct 182782 ATGCAGATCTTCGTAAAAACGCTGACCGGCAAAACGATCACTCTGGAAGTGGAGAGCTCC 182841 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || |||||||| | || ||| || ||| || || ||||| || || || |||||| Sbjct 182842 GACACTATCGACAACGTTAAAGCTAAGATTCAGGACAAGGAGGGCATTCCTCCTGATCAG 182901 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 |||||| | || | || || || || |||||||||| | | | || || ||||| Sbjct 182902 CAAAGATTGATCTTCGCTGGTAAGCAGCTCGAAGATGGTCGTACCCTCGCAGACTACAAC 182961 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTG 25384 || ||||| || ||||| | ||||| ||| Sbjct 182962 ATCCAAAAGGAGTCCACTCTCCATTTGGTG 182991 Score = 82.4 bits (90), Expect = 7e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 25174 CATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAA 25233 |||||| | || || || || | || || || | |||||| |||| ||||| || Sbjct 175895 CATGCAGATCTTCGTGAAGACTCTGACGGGGAAGACCATCACGCTCGAGGTCGAGAGCAG 175954 Query 25234 CGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 ||||| ||||| | || || |||||| || || ||||| || || || || || Sbjct 175955 TGATACCATCGACAATGTGAAGGTTAAAATTCAGGACAAGGAGGGAATTCCTCCTGACCA 176014 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAA 25353 ||| || || || | || |||||| ||||||||||| | | | | ||| ||||| Sbjct 176015 GCAGAGGCTGATCTTCGCCGGCAAGCAACTCGAAGACGGACGCACCCTTGCCGACTACAA 176074 Query 25354 TATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 || || || |||||||| | ||| | ||| | | ||||| ||||| Sbjct 176075 CATCCAGAAGGAATCCACACTCCATCTGGTGCTTCGGTTGAGGGGAGG 176122 Score = 82.4 bits (90), Expect = 7e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | || || || || | || || ||| | ||||| | ||||| || | Sbjct 183333 ATGCAAATCTTCGTCAAGACTCTGACGGGGAAAACCATCACTCTGGAAGTGGAGAGCTCT 183392 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || || ||||| | || ||| ||||| || || ||||| || || ||||| ||| Sbjct 183393 GACACCATCGACAATGTGAAAGCCAAAATCCAGGACAAGGAGGGAATTCCTCCCGACCAG 183452 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 || || | || | || ||||| || || ||||||| | | | | ||||||||| Sbjct 183453 CAGCGATTGATCTTCGCTGGCAAGCAGCTGGAAGATGGTCGTACACTGGCCGATTACAAC 183512 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGGAAA 25404 ||||||||||| || || | ||| | ||||| | || |||||||||| Sbjct 183513 ATTCAAAAAGAGTCGACGTTGCATCTGGTGTTGCGTCTGCGAGGAGGAAA 183562 >seq4073 Length=488838 Score = 93.3 bits (102), Expect = 4e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | || || |||||| | ||||| || | ||||| | || ||||| | Sbjct 172999 ATGCAAATCTTCGTGAAAACACTGACCGGCAAGACCATCACTCTGGAGGTCGAGAGCTCG 172940 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || || ||||| | || ||| || ||| || || || ||||| || ||||||||| Sbjct 172939 GACACCATCGACAACGTCAAAGCGAAGATTCAGGACAAGGAAGGTATTCCTCCCGATCAG 172880 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 || || | || | || ||| || ||||||||||||| ||| | | ||||| || Sbjct 172879 CAGAGGTTGATCTTCGCCGGTAAGCAACTCGAAGATGGGCGAACTCTTGCAGATTATAAC 172820 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGGAA 25403 ||||| ||||| |||||| | ||| | || | | | |||||||||| Sbjct 172819 ATTCAGAAAGAGTCCACCCTGCATCTTGTCCTCCGTCTTAGAGGAGGAA 172771 >seq2625 Length=346021 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||||| | || || || || | || || || | ||||| | || |||||| | Sbjct 280195 ATGCAGATCTTCGTCAAGACCCTCACGGGGAAGACCATCACTCTTGAGGTCGAAAGCTCT 280254 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 ||||| ||||| | || || |||||| ||||| ||||| || || || || ||| Sbjct 280255 GATACGATCGACAATGTGAAGACGAAAATTCAAGATAAGGAGGGCATTCCCCCTGACCAG 280314 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 || | | |||| || ||| |||||||||||||| | | | | | ||| ||||| Sbjct 280315 CAGCGGTTGATTTTCGCCGGTAAACAACTCGAAGACGGTCGCACGCTGGCCGACTACAAC 280374 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 || |||||||| ||||| | ||| | ||||| || || ||||||| Sbjct 280375 ATCCAAAAAGAGTCCACTTTGCATCTTGTGTTGAGGCTGCGAGGAGG 280421 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445071383055840