Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marchantia_20polymorpha_20subsp._20ruderalis_20[genbank_20GCA_5F0016 41455.1_202016-05-10] 4,137 sequences; 205,718,403 total letters Query= NC_026421.1 Length=182380 Score E Sequences producing significant alignments: (Bits) Value seq470 100 3e-16 >seq470 Length=504015 Score = 100 bits (110), Expect = 3e-16 Identities = 96/123 (78%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 146995 ACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAAGGGGACCCCCAGG 147054 ||||| || | |||||||||||| || |||||| |||||||||| |||| || || | Sbjct 117213 ACGTGAGCAATCATGTAGGTGAGGAGGGAGTAGGAGGCTATGTTGTAGGGTACTCCTAAT 117154 Query 147055 CCCATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAGCTCCCCGTCGGCCACGTAAAAC 147114 ||||| || | || | ||||||| || || || ||||| |||| ||||||||||||| Sbjct 117153 CCCATATCACATGAGCGTTGGTACATTTGACATGATAGCTCTCCGTTGGCCACGTAAAAC 117094 Query 147115 TGG 147117 ||| Sbjct 117093 TGG 117091 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583457826376800