Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marchantia_20polymorpha_20subsp._20ruderalis_20[genbank_20GCA_5F0016 41455.1_202016-05-10] 4,137 sequences; 205,718,403 total letters Query= NC_026430.1 Length=125767 Score E Sequences producing significant alignments: (Bits) Value seq2625 89.7 4e-13 seq3072 86.0 5e-12 >seq2625 Length=346021 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319 ||||| ||||| || ||||| |||||||||||||| ||||| |||| || | Sbjct 281335 ATGCAGATTTTCGTCAAAACCTTGACTGGCAAGACGATTACTTTGGAGGTTGAGAGTTCC 281394 Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379 || | ||| | | |||||| |||||| ||||| || || | || || || Sbjct 281395 GACACCATTGACAATGTGAAAACCAAAATTCAAGACAAGGAGGGAATTCCTCCAGACCAG 281454 Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAAC 106439 || || | |||| ||| || ||||| | |||||| | || | | |||||||||| Sbjct 281455 CAGAGATTGATTTTTGCCGGGAAACAGCTTGAAGATGGTCGGACACTCGCCGATTACAAC 281514 Query 106440 ATACAAAAAGAATCTACACTACATTTAGTATTGAGGTTACGAGGAGG 106486 || ||||| |||||||| | ||||| || ||||| | ||||||| Sbjct 281515 ATCCAAAAGGAATCTACCTTGCATTTGGTCCTGAGGCTGAGAGGAGG 281561 >seq3072 Length=975934 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319 |||||||| || |||||| | | || ||||||||||| || | || || | Sbjct 271355 ATGCAAATCTTCGTTAAAGCCCTCACGGGCAAGACCATAACTCTTGAGGTGGAGAGCTCT 271414 Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379 || | ||| | | |||||| || ||| ||||| |||||| | || ||||| Sbjct 271415 GACACGATTGACAACGTGAAAACGAAGATTCAGGACAAGGAAGGCATCCCTCCAGATCAG 271474 Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAAC 106439 || ||| | |||| ||| || || ||| | || ||| | || ||| ||| |||||| Sbjct 271475 CAGAGGTTGATTTTTGCCGGAAAGCAACTTGAGGATGGGAGGACGTTGGCCGACTACAAC 271534 Query 106440 ATACAAAAAGAATCTACACTACATTTAGTATTGAGGTTACGAGGAGG 106486 || ||||| |||||||| || ||||| || |||||| | |||| || Sbjct 271535 ATCCAAAACGAATCTACCCTCCATTTGGTGTTGAGGCTGAGAGGTGG 271581 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 402309314667296