Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marchantia_20polymorpha_20subsp._20ruderalis_20[genbank_20GCA_5F0016 41455.1_202016-05-10] 4,137 sequences; 205,718,403 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq3885 120 4e-21 >seq3885 Length=497522 Score = 120 bits (132), Expect = 4e-21 Identities = 171/234 (73%), Gaps = 10/234 (4%) Strand=Plus/Plus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 ||||||||||||||||||||||| || |||||| ||| || | ||| || || Sbjct 97038 ATCTACAAGGTGCTCAAGCAGGTCCA-CCCCGA---GTTCGG--AATCTCGTCGAAAGCC 97091 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATC-GGC-ACCGAGGCCG 725028 ||| ||| |||||||| || |||||||||| |||| | | | ||| | ||||| | Sbjct 97092 ATGGGGATTATGAACTCTTTCATCAACGACATCTTCGA--GAAGCTGGCTTCTGAGGCTG 97149 Query 725029 GTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCG 725088 ||| || || |||| ||||||| || || | | |||||||| || || |||| Sbjct 97150 CTCGTCTTGCTCGCTACAACAAGAAGCCGACCATTGCTTCTCGCGAGATTCAAACTGCCG 97209 Query 725089 TGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 |||| || | ||| |||||| ||||||| ||| |||||||| |||||||||| Sbjct 97210 TGCGACTCACTCTGCCCGGCGAGCTGGCCAAGCATGCCGTCTCGGAGGGCACCA 97263 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177412178746194