Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marchantia_20polymorpha_20subsp._20ruderalis_20[genbank_20GCA_5F0016 41455.1_202016-05-10] 4,137 sequences; 205,718,403 total letters Query= NC_026923.1 Length=179110 Score E Sequences producing significant alignments: (Bits) Value seq2878 318 7e-82 seq467 140 4e-28 seq3792 134 2e-26 seq3282 114 1e-20 seq3761 113 5e-20 seq164 111 2e-19 seq1308 107 2e-18 seq595 105 8e-18 seq1921 84.2 3e-11 >seq2878 Length=397857 Score = 318 bits (352), Expect = 7e-82 Identities = 375/505 (74%), Gaps = 2/505 (0%) Strand=Plus/Plus Query 159549 TAATTTTCTCACGGCAGCTGTCTCAACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCT 159608 ||||||| | || || ||||| || || || || || | | | ||||||| | || | Sbjct 140288 TAATTTTTTAACTGCCGCTGTTTCTACTCCAGCAAATAGTTTAGCTCATTCTTTACTATT 140347 Query 159609 ACTTTGGGGTCCTGAGTCTCAAGGCGACTTCCAACGCTGGTGCCAACTTGGAGGGATTTG 159668 | | ||||| ||||| | ||||| || || || ||||||||| | || || | || Sbjct 140348 ATTATGGGGACCTGAAGCACAAGGTGATTTTACTCGTTGGTGCCAATTAGGTGGTTTATG 140407 Query 159669 GTCCTTTGTTGCTCTCCACGGTGCATTCGCTCTCATAGGTTTTATGCTACGGCAATTTGA 159728 | | ||||| ||||| || |||||||| || | ||||| |||||| |||| |||||||| Sbjct 140408 GACTTTTGTAGCTCTTCATGGTGCATTTGCCTTAATAGGCTTTATGTTACGACAATTTGA 140467 Query 159729 AATTGCTCG-TCTAGTTGGTATCCGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATTG 159787 | ||||| | ||| ||| | |||||||| ||||| |||||||| ||||| ||||||| Sbjct 140468 ACTTGCTAGATCT-GTTCAATTACGTCCTTATAATGCAATTGCGTTTTCTGGACCTATTG 140526 Query 159788 CTGTTTTTGTCAGCGTATTCCTTATCTATCCACTGGGTCAGTCTTCATGGTTCTTTGCAC 159847 |||||||||| || || ||||| ||||| | || || || ||||| ||||||| Sbjct 140527 CTGTTTTTGTATCTGTTTTTCTTATTTATCCTTTAGGACAATCAGGTTGGTTTTTTGCAC 140586 Query 159848 CTAGTTTCGGGGTAGCAGCAATCTTTAGATTCCTGTTGTTCCTTCAGGGTTTCCACAACT 159907 ||||||| || ||||| ||||| |||||||| | | || |||| || || || |||| Sbjct 140587 CTAGTTTTGGTGTAGCTGCAATTTTTAGATTTATTCTTTTTTTTCAAGGCTTTCATAACT 140646 Query 159908 GGACCCTCAACCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGTGGAGCACTGTTGT 159967 |||| | ||||| |||||||||||||| || ||||| | |||||| || || || | Sbjct 140647 GGACTTTAAACCCATTCCATATGATGGGTGTCGCTGGAGTTTTAGGTGCTGCTCTTTTAT 140706 Query 159968 GTGCAATCCATGGTGCTACTGTAGAGAACACATTGTTTGAAGATGGAGAACAAGCAAACA 160027 | ||||| || ||||||||||| ||||| || || ||||||||||| || ||||||| Sbjct 140707 GCGCAATTCACGGTGCTACTGTTGAGAATACTTTATTTGAAGATGGTGATGGTGCAAACA 140766 Query 160028 CATTTAAGGCGTTTGAGCCTACTCA 160052 |||| || ||| | || ||||| Sbjct 140767 CATTCCGTGCTTTTAACCCAACTCA 140791 >seq467 Length=265627 Score = 140 bits (154), Expect = 4e-28 Identities = 139/180 (77%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 158501 ACCATGGCATTCAACCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGT 158560 || ||||| |||||| | || ||||| ||||| ||||| || | |||| |||| ||| Sbjct 211264 ACTATGGCTTTCAACTTAAATGGTTTTAACTTTAACCAATCTGTTGTTGACAGTCAAGGT 211205 Query 158561 CGTGTGTTGAACACCTGGGCAGATGTACTGAACCGCGCTGGTCTTGGTATGGAAGTTATG 158620 ||||| | ||||| ||||| ||| | | ||||| ||| |||||||||||||||||| Sbjct 211204 CGTGTAATTAACACTTGGGCTGATATTATCAACCGTGCTAACCTTGGTATGGAAGTTATG 211145 Query 158621 CATGAGCGTAACGCACACAACTTCCCACTGGATCTTGCTGCTGCTGAGTCTACACCTGTA 158680 ||||| |||||||| ||||||||||| || || | ||||||| ||| || | ||||| Sbjct 211144 CATGAACGTAACGCTCACAACTTCCCTCTAGACTTAGCTGCTGTTGAAGCTCCTGCTGTA 211085 >seq3792 Length=366655 Score = 134 bits (148), Expect = 2e-26 Identities = 125/159 (79%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 158029 TTACCGTTTAGGTATGCGCCCATGGATCTGTGTAGCATATTCTGCTCCAGTCGCTGCAGC 158088 |||||||||||||||||| || ||||| ||| |||||||| |||||||| ||||| || Sbjct 281814 TTACCGTTTAGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCAGTTGCTGCTGC 281873 Query 158089 GAGTGCAGTATTCCTAGTCTATCCTTTCGGTCAAGGTTCTTTCTCCGATGCTATGCCTCT 158148 | ||| || ||| | |||| ||| | |||||||| |||||| || | ||||||| | Sbjct 281874 TACTGCTGTTTTCTTGATCTACCCTATTGGTCAAGGAAGTTTCTCAGACGGTATGCCTTT 281933 Query 158149 TGGTATCTCTGGTACTTTTAACTACATGCTTGTATTCCA 158187 ||||||||||||||||| || | |||| ||| |||| Sbjct 281934 AGGTATCTCTGGTACTTTCAATTTCATGACTGTTCTCCA 281972 >seq3282 Length=366234 Score = 114 bits (126), Expect = 1e-20 Identities = 108/138 (78%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 158501 ACCATGGCATTCAACCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGT 158560 || ||||| |||||| | || ||||| ||||| ||||| || | |||| |||| ||| Sbjct 190916 ACTATGGCTTTCAACTTAAATGGTTTTAACTTTAACCAATCTGTTGTTGACAGTCAAGGT 190975 Query 158561 CGTGTGTTGAACACCTGGGCAGATGTACTGAACCGCGCTGGTCTTGGTATGGAAGTTATG 158620 ||||| | ||||| ||||| ||| | | ||||| ||| |||||||||||||||||| Sbjct 190976 CGTGTAATTAACACTTGGGCTGATATTATCAACCGTGCTAACCTTGGTATGGAAGTTATG 191035 Query 158621 CATGAGCGTAACGCACAC 158638 ||||| |||||||| ||| Sbjct 191036 CATGAACGTAACGCTCAC 191053 >seq3761 Length=231418 Score = 113 bits (124), Expect = 5e-20 Identities = 109/140 (78%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 157830 CTGGTTCACTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCTAGTTCAAACG 157889 ||||||| || | || || || |||||||| |||||||| || |||||| || | Sbjct 108177 CTGGTTCTCTTCTTTACGGAAATAACATCATTTCTGGTGCTATTATTCCTACCTCTGCAG 108236 Query 157890 CAATCGGTCTCCACTTCTACCCCATCTGGGAAGCAGCATCTCTTGACGAGTGGCTGTATA 157949 | |||||| | ||||||||||| || |||||||| || ||| |||| || ||| |||| | Sbjct 108237 CTATCGGTTTACACTTCTACCCTATTTGGGAAGCTGCTTCTGTTGATGAATGGTTGTACA 108296 Query 157950 ACGGTGGTCCTTTCCAACTT 157969 |||||||||||| | ||||| Sbjct 108297 ACGGTGGTCCTTACGAACTT 108316 >seq164 Length=700310 Score = 111 bits (122), Expect = 2e-19 Identities = 128/171 (75%), Gaps = 1/171 (1%) Strand=Plus/Plus Query 160207 TTCAACCTT-CGTGCTTACGATTTCGTGAGTCAGGAGATTAGAGCAGCAGAAGATCCTGA 160265 ||||| || ||||| |||||||| || || || ||| | |||||||| ||||| || Sbjct 563853 TTCAAATTTACGTGCCTACGATTTTGTTTCCCAAGAAATTCGTGCAGCAGAGGATCCAGA 563912 Query 160266 ATTTGAGACCTTCTACACCAAGAACATCCTATTGAATGAAGGACTTCGTGCTTGGATGGC 160325 |||||| || || || || || || || |||| |||||||| || | ||||||||||| Sbjct 563913 ATTTGAAACTTTTTATACAAAAAATATTTTATTAAATGAAGGTATTAGAGCTTGGATGGC 563972 Query 160326 ACCTGCTGATCAACCACATGAAAACTTTATCTTCCCTGAGGAAGTACTACC 160376 | || ||||| || |||||||| || | ||||| ||||| || || || Sbjct 563973 AGCTCAAGATCAGCCTCATGAAAATCTTGTATTCCCAGAGGAGGTTCTGCC 564023 >seq1308 Length=500924 Score = 107 bits (118), Expect = 2e-18 Identities = 100/127 (79%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 158554 TCAGGGTCGTGTGTTGAACACCTGGGCAGATGTACTGAACCGCGCTGGTCTTGGTATGGA 158613 ||| |||||||| | ||||| ||||| ||| | | ||||| ||| ||||||||||| Sbjct 59770 TCAAGGTCGTGTAATTAACACTTGGGCTGATATTATCAACCGTGCTAACCTTGGTATGGA 59711 Query 158614 AGTTATGCATGAGCGTAACGCACACAACTTCCCACTGGATCTTGCTGCTGCTGAGTCTAC 158673 |||||||||||| |||||||| ||||||||||| || || | ||||||| ||| || | Sbjct 59710 AGTTATGCATGAACGTAACGCTCACAACTTCCCTCTAGACTTAGCTGCTGTTGAAGCTCC 59651 Query 158674 ACCTGTA 158680 ||||| Sbjct 59650 TGCTGTA 59644 >seq595 Length=533780 Score = 105 bits (116), Expect = 8e-18 Identities = 121/163 (74%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 160184 CTATTGGCATTATTGGTCTTGCTTTCAACCTTCGTGCTTACGATTTCGTGAGTCAGGAGA 160243 ||||||| || | ||| | ||||| || | ||||| |||||||| || || || | Sbjct 284346 CTATTGGGGTTGTAGGTTTAGCTTTAAATTTACGTGCCTACGATTTTGTTTCCCAAGAAA 284287 Query 160244 TTAGAGCAGCAGAAGATCCTGAATTTGAGACCTTCTACACCAAGAACATCCTATTGAATG 160303 || | |||||||| ||||| |||||||| || || || || || || || |||| |||| Sbjct 284286 TTCGTGCAGCAGAGGATCCAGAATTTGAAACTTTTTATACAAAAAATATTTTATTAAATG 284227 Query 160304 AAGGACTTCGTGCTTGGATGGCACCTGCTGATCAACCACATGA 160346 |||| || | |||||||||||| || ||||| || ||||| Sbjct 284226 AAGGTATTAGAGCTTGGATGGCAGCTCAAGATCAGCCTCATGA 284184 >seq1921 Length=72791 Score = 84.2 bits (92), Expect = 3e-11 Identities = 55/61 (90%), Gaps = 0/61 (0%) Strand=Plus/Plus Query 158603 CTTGGTATGGAAGTTATGCATGAGCGTAACGCACACAACTTCCCACTGGATCTTGCTGCT 158662 ||||||||||||||||||||||| |||||||| ||||||||||| ||||| | |||||| Sbjct 54767 CTTGGTATGGAAGTTATGCATGAACGTAACGCTCACAACTTCCCTCTGGACTTAGCTGCT 54826 Query 158663 G 158663 | Sbjct 54827 G 54827 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 572994367496400