Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marchantia_20polymorpha_20subsp._20ruderalis_20[genbank_20GCA_5F0016 41455.1_202016-05-10] 4,137 sequences; 205,718,403 total letters Query= NC_026924.1 Length=174885 Score E Sequences producing significant alignments: (Bits) Value seq2878 253 2e-62 seq467 156 5e-33 seq3282 136 4e-27 seq3792 132 5e-26 seq1308 116 4e-21 seq3761 100 3e-16 seq470 98.7 1e-15 seq1921 84.2 2e-11 >seq2878 Length=397857 Score = 253 bits (280), Expect = 2e-62 Identities = 319/438 (73%), Gaps = 0/438 (0%) Strand=Plus/Plus Query 161903 TCATTCTCTTCTTCTTCTCTGGGGTCCTGAGGCTCAAGGGGATTTCGTCCGCTGGGTCCA 161962 ||||||| | || | | ||||| ||||| || ||||| ||||| || ||| ||| Sbjct 140333 TCATTCTTTACTATTATTATGGGGACCTGAAGCACAAGGTGATTTTACTCGTTGGTGCCA 140392 Query 161963 ACTTGGGGGACTCTGGAATTTTGTGGCACTCCATGGTGCCTTCGCCCTAATTGGATTCAT 162022 | | || || | |||| |||||| || || |||||||| || ||| |||| || || || Sbjct 140393 ATTAGGTGGTTTATGGACTTTTGTAGCTCTTCATGGTGCATTTGCCTTAATAGGCTTTAT 140452 Query 162023 GCTCCGTCAGTTTGAACTGGCACGTCTTATTGGTATCCGTCCCTACAATGCTATTGCGTT 162082 | | || || |||||||| || | | || | ||||| || ||||| |||||||| Sbjct 140453 GTTACGACAATTTGAACTTGCTAGATCTGTTCAATTACGTCCTTATAATGCAATTGCGTT 140512 Query 162083 CTCTGGTCCTATTGCTGTTTTTGTCAGCGTCTTCCTTATCTACCCATTGGGTCAGTCCAG 162142 ||||| ||||||||||||||||| || || ||||| || || || || || || | Sbjct 140513 TTCTGGACCTATTGCTGTTTTTGTATCTGTTTTTCTTATTTATCCTTTAGGACAATCAGG 140572 Query 162143 TTGGTTTTTCGCTCCGTCCTTTGGGGTGGCAGCAATCTTTAGATTCCTGTTGTTTCTTCA 162202 ||||||||| || || ||||| || || ||||| |||||||| | | ||| |||| Sbjct 140573 TTGGTTTTTTGCACCTAGTTTTGGTGTAGCTGCAATTTTTAGATTTATTCTTTTTTTTCA 140632 Query 162203 AGGATTCCATAACTGGACCCTGAACCCCTTCCATATGATGGGAGTTGCTGGTATACTAGG 162262 ||| || ||||||||||| | ||||| |||||||||||||| || ||||| | |||| Sbjct 140633 AGGCTTTCATAACTGGACTTTAAACCCATTCCATATGATGGGTGTCGCTGGAGTTTTAGG 140692 Query 162263 TGGAGCACTTCTATCTGCTATTCACGGAGTCACAGTTGAAAATACATTATACGAGGATGG 162322 || || ||| ||| || |||||||| | || ||||| ||||| |||| || ||||| Sbjct 140693 TGCTGCTCTTTTATGCGCAATTCACGGTGCTACTGTTGAGAATACTTTATTTGAAGATGG 140752 Query 162323 AGAACAAGCAAACACCTT 162340 || |||||||| || Sbjct 140753 TGATGGTGCAAACACATT 140770 >seq467 Length=265627 Score = 156 bits (172), Expect = 5e-33 Identities = 155/200 (78%), Gaps = 3/200 (2%) Strand=Plus/Minus Query 160766 CACTGCTCTTGGTGTTAGCACCATGGCATTCAACCTCAACGGTTTCAACTTCAACCAGTC 160825 || |||| | ||| | ||||| ||||| |||||| | || ||||| ||||| ||||| || Sbjct 211283 CAATGCTTTAGGTATCAGCACTATGGCTTTCAACTTAAATGGTTTTAACTTTAACCAATC 211224 Query 160826 CATCCTCGATGGTCAAGGTCGTGTACTGAACACCTGGGCAGACGTACTGAATCGTGCTGG 160885 | | || |||||||||||||| | ||||| ||||| || | | || |||||| Sbjct 211223 TGTTGTTGACAGTCAAGGTCGTGTAATTAACACTTGGGCTGATATTATCAACCGTGCTAA 211164 Query 160886 TCTTGGTATGGAAGTTATGCATGAGCGTAACGCACACAACTTCCCACTCGACCTCGCTGC 160945 ||||||||||||||||||||||| |||||||| ||||||||||| || ||| | ||||| Sbjct 211163 CCTTGGTATGGAAGTTATGCATGAACGTAACGCTCACAACTTCCCTCTAGACTTAGCTGC 211104 Query 160946 TGCTGAGTCAACTCCTGTTG 160965 || ||| | |||||| || Sbjct 211103 TGTTGA---AGCTCCTGCTG 211087 >seq3282 Length=366234 Score = 136 bits (150), Expect = 4e-27 Identities = 131/168 (78%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 160755 GGAATCTGGTTCACTGCTCTTGGTGTTAGCACCATGGCATTCAACCTCAACGGTTTCAAC 160814 || || ||||| |||||| | ||| | ||||| ||||| |||||| | || ||||| ||| Sbjct 190886 GGTATTTGGTTTACTGCTTTAGGTATCAGCACTATGGCTTTCAACTTAAATGGTTTTAAC 190945 Query 160815 TTCAACCAGTCCATCCTCGATGGTCAAGGTCGTGTACTGAACACCTGGGCAGACGTACTG 160874 || ||||| || | | || |||||||||||||| | ||||| ||||| || | | Sbjct 190946 TTTAACCAATCTGTTGTTGACAGTCAAGGTCGTGTAATTAACACTTGGGCTGATATTATC 191005 Query 160875 AATCGTGCTGGTCTTGGTATGGAAGTTATGCATGAGCGTAACGCACAC 160922 || |||||| ||||||||||||||||||||||| |||||||| ||| Sbjct 191006 AACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAACGCTCAC 191053 >seq3792 Length=366655 Score = 132 bits (146), Expect = 5e-26 Identities = 124/158 (78%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 160314 TACCGTTTAGGTATGCGCCCCTGGATCTGTGTAGCATATTCTGCTCCAGTCGCTGCAGCA 160373 ||||||||||||||||| || ||||| ||| |||||||| |||||||| ||||| || Sbjct 281815 TACCGTTTAGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCAGTTGCTGCTGCT 281874 Query 160374 TCTGCTGTATTCCTCGTATATCCTTTCGGTCAAGGTTCTTTCTCCGATGCTATGCCTCTT 160433 ||||||| ||| | | || ||| | |||||||| |||||| || | ||||||| | Sbjct 281875 ACTGCTGTTTTCTTGATCTACCCTATTGGTCAAGGAAGTTTCTCAGACGGTATGCCTTTA 281934 Query 160434 GGTATCTCTGGTACTTTTAACTACATGCTTGTATTCCA 160471 ||||||||||||||||| || | |||| ||| |||| Sbjct 281935 GGTATCTCTGGTACTTTCAATTTCATGACTGTTCTCCA 281972 >seq1308 Length=500924 Score = 116 bits (128), Expect = 4e-21 Identities = 103/128 (80%), Gaps = 3/128 (2%) Strand=Plus/Minus Query 160838 TCAAGGTCGTGTACTGAACACCTGGGCAGACGTACTGAATCGTGCTGGTCTTGGTATGGA 160897 ||||||||||||| | ||||| ||||| || | | || |||||| ||||||||||| Sbjct 59770 TCAAGGTCGTGTAATTAACACTTGGGCTGATATTATCAACCGTGCTAACCTTGGTATGGA 59711 Query 160898 AGTTATGCATGAGCGTAACGCACACAACTTCCCACTCGACCTCGCTGCTGCTGAGTCAAC 160957 |||||||||||| |||||||| ||||||||||| || ||| | ||||||| ||| | | Sbjct 59710 AGTTATGCATGAACGTAACGCTCACAACTTCCCTCTAGACTTAGCTGCTGTTGA---AGC 59654 Query 160958 TCCTGTTG 160965 ||||| || Sbjct 59653 TCCTGCTG 59646 >seq3761 Length=231418 Score = 100 bits (110), Expect = 3e-16 Identities = 109/145 (75%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 160108 CCGTCGCTGGTTCACTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCTT 160167 |||| ||||||| || | || || || |||||||| |||||||| || |||| | | Sbjct 108171 CCGTATCTGGTTCTCTTCTTTACGGAAATAACATCATTTCTGGTGCTATTATTCCTACCT 108230 Query 160168 CCAACGCAATTGGTCTTCACTTCTATCCCATCTGGGAAGCCGCATCACTTGATGAGTGGC 160227 | || || ||| | |||||||| || || |||||||| || || ||||||| ||| Sbjct 108231 CTGCAGCTATCGGTTTACACTTCTACCCTATTTGGGAAGCTGCTTCTGTTGATGAATGGT 108290 Query 160228 TGTATAACGGTGGTCCTTTCCAACT 160252 |||| ||||||||||||| | |||| Sbjct 108291 TGTACAACGGTGGTCCTTACGAACT 108315 >seq470 Length=504015 Score = 98.7 bits (108), Expect = 1e-15 Identities = 129/179 (72%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 161126 TACATTTTAGATGCAGCAGAAGAGGCAGGAGTTGATATTAACTATTCTTGTCGTGCTGGT 161185 ||||| || || || || ||||| || ||| | | | ||| ||||| ||||| ||| Sbjct 204296 TACATCTTGGACGCCGCTGAAGAAGCCGGACTCTCTCTGCCCTACTCTTGCCGTGCCGGT 204237 Query 161186 GCTTGCTCTTCCTGTGCAGGTAAAATTATTTCAGGTACAGTAGACCAGTCTGACCAGTCC 161245 ||||||||||| || ||||| || | | | || || ||||| ||||||||||| Sbjct 204236 GCTTGCTCTTCTTGCGCAGGAAAGGTCACCGCTGGCGAGGTCGACCAAGCTGACCAGTCC 204177 Query 161246 TTCTTGGATGATGACCAGATTGAATCTGGATTCCTTTTGACATGTGTTGCATATCCTAC 161304 |||||||| ||||||||||| || |||||| | |||| || |||| || || || Sbjct 204176 TTCTTGGACGATGACCAGATGGATGAGGGATTCGTCCTGACCTGCATTGCGTACCCCAC 204118 >seq1921 Length=72791 Score = 84.2 bits (92), Expect = 2e-11 Identities = 55/61 (90%), Gaps = 0/61 (0%) Strand=Plus/Plus Query 160887 CTTGGTATGGAAGTTATGCATGAGCGTAACGCACACAACTTCCCACTCGACCTCGCTGCT 160946 ||||||||||||||||||||||| |||||||| ||||||||||| || ||| | |||||| Sbjct 54767 CTTGGTATGGAAGTTATGCATGAACGTAACGCTCACAACTTCCCTCTGGACTTAGCTGCT 54826 Query 160947 G 160947 | Sbjct 54827 G 54827 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 559475066649400