Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marchantia_20polymorpha_20subsp._20ruderalis_20[genbank_20GCA_5F0016 41455.1_202016-05-10] 4,137 sequences; 205,718,403 total letters Query= NC_026926.1 Length=192108 Score E Sequences producing significant alignments: (Bits) Value seq2878 226 3e-54 seq3792 125 9e-24 seq467 109 7e-19 seq3761 100 3e-16 seq2371 84.2 3e-11 >seq2878 Length=397857 Score = 226 bits (250), Expect = 3e-54 Identities = 342/484 (71%), Gaps = 2/484 (0%) Strand=Plus/Plus Query 182531 TAACTTTCTTACGGCAGCTGTCTCGACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCT 182590 ||| ||| | || || ||||| || || || || || | | | ||||||| | || | Sbjct 140288 TAATTTTTTAACTGCCGCTGTTTCTACTCCAGCAAATAGTTTAGCTCATTCTTTACTATT 140347 Query 182591 ACTTTGGGGTCCTGAGTCTCAGGGGAATTTCCAGCGGTGGTGCCAACTTGGGGGACTCTG 182650 | | ||||| ||||| | || || |||| || ||||||||| | || || | || Sbjct 140348 ATTATGGGGACCTGAAGCACAAGGTGATTTTACTCGTTGGTGCCAATTAGGTGGTTTATG 140407 Query 182651 GAATTTCGTGGCTCTCCACGGTGCCTTCGCTCTCATTGGTTTCATGCTTAGGCAATTTGA 182710 || ||| || ||||| || ||||| || || | || || || ||| | | |||||||| Sbjct 140408 GACTTTTGTAGCTCTTCATGGTGCATTTGCCTTAATAGGCTTTATGTTACGACAATTTGA 140467 Query 182711 ACTTGCTCGC-CTGATTGGAATCAGACCTTACAATGCGATTGCTTTTTCTGGTCCTATTG 182769 ||||||| | ||| || | | | ||||| ||||| ||||| |||||||| ||||||| Sbjct 140468 ACTTGCTAGATCTG-TTCAATTACGTCCTTATAATGCAATTGCGTTTTCTGGACCTATTG 140526 Query 182770 CTGTATTCGTCAGTGTGTTCCTCATCTATCCTTTGGGACAGTCCTCTTGGTTTTTCGCGC 182829 |||| || || ||| || || || |||||||| ||||| || ||||||||| || | Sbjct 140527 CTGTTTTTGTATCTGTTTTTCTTATTTATCCTTTAGGACAATCAGGTTGGTTTTTTGCAC 140586 Query 182830 CGTCCTTTGGTGTCGCGGCGATCTTCAGGTTCCTGTTGTTCCTTCAGGGTTTCCACAACT 182889 | |||||||| || || || || || || | | || |||| || || || |||| Sbjct 140587 CTAGTTTTGGTGTAGCTGCAATTTTTAGATTTATTCTTTTTTTTCAAGGCTTTCATAACT 140646 Query 182890 GGACACTCAACCCCTTCCATATGATGGGAGTTGCTGGTATACTGGGTGGAGCACTGCTCA 182949 |||| | ||||| |||||||||||||| || ||||| | | |||| || || | Sbjct 140647 GGACTTTAAACCCATTCCATATGATGGGTGTCGCTGGAGTTTTAGGTGCTGCTCTTTTAT 140706 Query 182950 GTGCTATCCATGGTGTCACAGTAGAGAATACCTTGTATGAAGATGGAGAACAGGCAAACA 183009 | || || || |||| || || |||||||| || | ||||||||| || ||||||| Sbjct 140707 GCGCAATTCACGGTGCTACTGTTGAGAATACTTTATTTGAAGATGGTGATGGTGCAAACA 140766 Query 183010 CATT 183013 |||| Sbjct 140767 CATT 140770 >seq3792 Length=366655 Score = 125 bits (138), Expect = 9e-24 Identities = 123/159 (77%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 181334 TTACCGCTTAGGTATGCGCCCCTGGATCTGTGTTGCATACTCTGCTCCAGTCGCAGCAGC 181393 |||||| ||||||||||| || ||||| ||||||||| || |||||||| || || || Sbjct 281814 TTACCGTTTAGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCAGTTGCTGCTGC 281873 Query 181394 ATCTGCTGTATTCCTAGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCAATGCCACT 181453 ||||||| ||| | |||| ||| | |||||||| |||||| |||| ||||| | Sbjct 281874 TACTGCTGTTTTCTTGATCTACCCTATTGGTCAAGGAAGTTTCTCAGACGGTATGCCTTT 281933 Query 181454 TGGCATCTCTGGTACATTCAACTACATGCTTGTTTTCCA 181492 || ||||||||||| ||||| | |||| |||| |||| Sbjct 281934 AGGTATCTCTGGTACTTTCAATTTCATGACTGTTCTCCA 281972 >seq467 Length=265627 Score = 109 bits (120), Expect = 7e-19 Identities = 127/169 (75%), Gaps = 3/169 (2%) Strand=Plus/Minus Query 181803 AGCACCATGGCATTTAACCTCAATGGATTCAACTTCAACCAGTCTATCCTCGACGGACAA 181862 ||||| ||||| || ||| | ||||| || ||||| ||||| ||| | | ||| | ||| Sbjct 211267 AGCACTATGGCTTTCAACTTAAATGGTTTTAACTTTAACCAATCTGTTGTTGACAGTCAA 211208 Query 181863 GGACGTGTCCTCAACACCTGGGCAGACGTGCTCAACCGTGCCGGTCTCGGCATGGAAGTC 181922 || ||||| | ||||| ||||| || | |||||||||| || || |||||||| Sbjct 211207 GGTCGTGTAATTAACACTTGGGCTGATATTATCAACCGTGCTAACCTTGGTATGGAAGTT 211148 Query 181923 ATGCACGAGCGCAACGCGCACAACTTCCCGCTTGATCTTGCAGCAGCTG 181971 ||||| || || ||||| ||||||||||| || || ||| ||| |||| Sbjct 211147 ATGCATGAACGTAACGCTCACAACTTCCCTCTAGA-CTT--AGCTGCTG 211102 >seq3761 Length=231418 Score = 100 bits (110), Expect = 3e-16 Identities = 109/145 (75%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 181129 CCGTCGCTGGTTCACTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCTT 181188 |||| ||||||| || | || || || |||||||| |||||||| || |||| | | Sbjct 108171 CCGTATCTGGTTCTCTTCTTTACGGAAATAACATCATTTCTGGTGCTATTATTCCTACCT 108230 Query 181189 CCAACGCAATTGGTCTTCACTTCTATCCCATCTGGGAAGCCGCATCACTTGATGAGTGGC 181248 | || || ||| | |||||||| || || |||||||| || || ||||||| ||| Sbjct 108231 CTGCAGCTATCGGTTTACACTTCTACCCTATTTGGGAAGCTGCTTCTGTTGATGAATGGT 108290 Query 181249 TGTATAACGGTGGTCCTTTCCAACT 181273 |||| ||||||||||||| | |||| Sbjct 108291 TGTACAACGGTGGTCCTTACGAACT 108315 >seq2371 Length=186017 Score = 84.2 bits (92), Expect = 3e-11 Identities = 95/125 (76%), Gaps = 2/125 (2%) Strand=Plus/Plus Query 181060 CAGCAACTATCTGT-TTCATCGTCGCCTTCGTCGCTGCTCCCCCTGTGGACATCGACGGC 181118 |||||||| || || ||||| | || || | || ||||| ||||| || || ||||| Sbjct 40992 CAGCAACT-TCAGTATTCATTATTGCTTTTATTGCAGCTCCTCCTGTAGATATTGACGGT 41050 Query 181119 ATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACAACATCATCTCTGGTGCAGTT 181178 ||||||||||| || ||||||| || | || || || |||||||| |||||||| || Sbjct 41051 ATCCGTGAACCTGTATCTGGTTCTCTTCTTTACGGAAATAACATCATTTCTGGTGCTATT 41110 Query 181179 GTTCC 181183 |||| Sbjct 41111 ATTCC 41115 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 614585816587360