Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marchantia_20polymorpha_20subsp._20ruderalis_20[genbank_20GCA_5F0016 41455.1_202016-05-10] 4,137 sequences; 205,718,403 total letters Query= NC_026927.1 Length=228143 Score E Sequences producing significant alignments: (Bits) Value seq2878 223 5e-53 seq467 132 7e-26 seq164 116 5e-21 seq3792 114 2e-20 seq3761 114 2e-20 seq2371 104 3e-17 seq595 100 4e-16 >seq2878 Length=397857 Score = 223 bits (246), Expect = 5e-53 Identities = 330/468 (71%), Gaps = 0/468 (0%) Strand=Plus/Plus Query 176021 TAACTTTCTCACAGCGGCTGTCTCGACTCCTGCTGATGCTATGGGTCATTCTCTTCTTCT 176080 ||| ||| | || || ||||| || ||||| || || | | | ||||||| | || | Sbjct 140288 TAATTTTTTAACTGCCGCTGTTTCTACTCCAGCAAATAGTTTAGCTCATTCTTTACTATT 140347 Query 176081 ACTTTGGGGTCCTGAATCTCAGGGCGACTTCCAGCGGTGGCTCCAACTTGGAGGGCTTTG 176140 | | ||||| |||||| | || || || || || ||| |||| | || || | || Sbjct 140348 ATTATGGGGACCTGAAGCACAAGGTGATTTTACTCGTTGGTGCCAATTAGGTGGTTTATG 140407 Query 176141 GTCCTTTGTTGCTCTCCACGGTGCCTTCGCTCTGATTGGATTCATGCTTCGTCAGTTTGA 176200 | | ||||| ||||| || ||||| || || | || || || ||| | || || ||||| Sbjct 140408 GACTTTTGTAGCTCTTCATGGTGCATTTGCCTTAATAGGCTTTATGTTACGACAATTTGA 140467 Query 176201 ACTGGCAAGACTCATTGGTATCCGTCCCTACAACGCTATTGCATTCAGTGGTCCTATCGC 176260 ||| || ||| || | ||||| || || || ||||| || ||| ||||| || Sbjct 140468 ACTTGCTAGATCTGTTCAATTACGTCCTTATAATGCAATTGCGTTTTCTGGACCTATTGC 140527 Query 176261 TGTATTTGTCAGTGTGTTTCTTCTATACCCACTAGGTCAATCTTCCTGGTTCTTTGCCCC 176320 ||| ||||| ||| |||||| | || || |||| ||||| ||||| ||||| || Sbjct 140528 TGTTTTTGTATCTGTTTTTCTTATTTATCCTTTAGGACAATCAGGTTGGTTTTTTGCACC 140587 Query 176321 CTCCTTTGGTGTGGCAGCAATCTTTAGATTCCTATTGTTTCTTCAGGGTTTCCACAACTG 176380 |||||||| || ||||| |||||||| | | ||| |||| || || || ||||| Sbjct 140588 TAGTTTTGGTGTAGCTGCAATTTTTAGATTTATTCTTTTTTTTCAAGGCTTTCATAACTG 140647 Query 176381 GACACTGAACCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGTGGAGCACTACTATC 176440 ||| | ||||| |||||||||||||| || ||||| | |||||| || || ||| Sbjct 140648 GACTTTAAACCCATTCCATATGATGGGTGTCGCTGGAGTTTTAGGTGCTGCTCTTTTATG 140707 Query 176441 TGCAATCCATGGCGTTACTGTTGAAAATACCCTATATGAAGATGGAGA 176488 ||||| || || | ||||||||| ||||| ||| ||||||||| || Sbjct 140708 CGCAATTCACGGTGCTACTGTTGAGAATACTTTATTTGAAGATGGTGA 140755 >seq467 Length=265627 Score = 132 bits (146), Expect = 7e-26 Identities = 130/168 (77%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 175292 CACAATGGCATTCAACCTCAATGGTTTCAACTTCAACCAGTCTGTTATCGACGGACAAGG 175351 ||| ||||| |||||| | |||||||| ||||| ||||| |||||| | ||| | ||||| Sbjct 211265 CACTATGGCTTTCAACTTAAATGGTTTTAACTTTAACCAATCTGTTGTTGACAGTCAAGG 211206 Query 175352 TAGAGTATTGAACACCTGGGCGGATGTTCTTAACAGAGCTGGTCTTGGGATGGAAGTAAT 175411 | | ||| | ||||| ||||| ||| || | ||| | ||| ||||| |||||||| || Sbjct 211205 TCGTGTAATTAACACTTGGGCTGATATTATCAACCGTGCTAACCTTGGTATGGAAGTTAT 211146 Query 175412 GCATGAGAGAAATGCACACAACTTCCCACTAGATTTGGCAGCAGCTGA 175459 |||||| | || || ||||||||||| ||||| || || || | ||| Sbjct 211145 GCATGAACGTAACGCTCACAACTTCCCTCTAGACTTAGCTGCTGTTGA 211098 >seq164 Length=700310 Score = 116 bits (128), Expect = 5e-21 Identities = 126/167 (75%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 176682 AATCTTCGTGCTTATGATTTTGTGAGCCAAGAGATTAGAGCAGCAGAAGATCCTGAGTTT 176741 ||| | ||||| || |||||||| |||||| ||| | |||||||| ||||| || ||| Sbjct 563857 AATTTACGTGCCTACGATTTTGTTTCCCAAGAAATTCGTGCAGCAGAGGATCCAGAATTT 563916 Query 176742 GAAACTTTCTACACAAAGAACATCCTTCTTAACGAAGGACTAAGAGCATGGATGGCACCT 176801 |||||||| || ||||| || || | | || ||||| | ||||| ||||||||| || Sbjct 563917 GAAACTTTTTATACAAAAAATATTTTATTAAATGAAGGTATTAGAGCTTGGATGGCAGCT 563976 Query 176802 GTGGATCAACCACATGAGTCATTTGTATTCCCAGAAGAAGTTCTACC 176848 ||||| || ||||| ||||||||||||| || ||||| || Sbjct 563977 CAAGATCAGCCTCATGAAAATCTTGTATTCCCAGAGGAGGTTCTGCC 564023 >seq3792 Length=366655 Score = 114 bits (126), Expect = 2e-20 Identities = 114/148 (77%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 174821 TTATCGTTTAGGTATGAGACCTTGGATCTGTGTAGCATACTCTGCACCAGTTGCAGCAGC 174880 ||| |||||||||||| | |||||||| ||| ||||| || || |||||||| || || Sbjct 281814 TTACCGTTTAGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCAGTTGCTGCTGC 281873 Query 174881 TTCAGCAGTATTCCTAGTCTATCCTTTCGGTCAAGGTTCATTCTCAGACGCGATGCCCTT 174940 | | || || ||| | |||| ||| | |||||||| |||||||||| ||||| || Sbjct 281874 TACTGCTGTTTTCTTGATCTACCCTATTGGTCAAGGAAGTTTCTCAGACGGTATGCCTTT 281933 Query 174941 GGGTATCTCTGGAACATTCAACTACATG 174968 ||||||||||| || ||||| | |||| Sbjct 281934 AGGTATCTCTGGTACTTTCAATTTCATG 281961 >seq3761 Length=231418 Score = 114 bits (126), Expect = 2e-20 Identities = 111/143 (78%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 174618 GTAGCTGGTTCACTCATGTATGGAAACAACATCATCTCTGGTGCAGTTGTTCCTAGTTCA 174677 ||| ||||||| || | || ||||| |||||||| |||||||| || |||||| || Sbjct 108173 GTATCTGGTTCTCTTCTTTACGGAAATAACATCATTTCTGGTGCTATTATTCCTACCTCT 108232 Query 174678 AACGCAATCGGTCTACACTTCTACCCAATCTGGGAAGCAGCCACACTCGACGAATGGCTC 174737 || |||||| ||||||||||||| || |||||||| || | | || |||||| | Sbjct 108233 GCAGCTATCGGTTTACACTTCTACCCTATTTGGGAAGCTGCTTCTGTTGATGAATGGTTG 108292 Query 174738 TACAACGGTGGTCCTTTCCAACT 174760 |||||||||||||||| | |||| Sbjct 108293 TACAACGGTGGTCCTTACGAACT 108315 >seq2371 Length=186017 Score = 104 bits (114), Expect = 3e-17 Identities = 119/160 (74%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 174537 ACATTGTTAGCCGCAACTGTATGTTTCATTATCGCTTTCGTGGGTGCTCCCCCAGTGGAC 174596 || || ||| | |||||| | |||||||| ||||| | | ||||| || || || Sbjct 40982 ACTTTATTAACAGCAACTTCAGTATTCATTATTGCTTTTATTGCAGCTCCTCCTGTAGAT 41041 Query 174597 ATCGACGGAATCCGTGAACCAGTAGCTGGTTCACTCATGTATGGAAACAACATCATCTCT 174656 || ||||| ||||||||||| ||| ||||||| || | || ||||| |||||||| ||| Sbjct 41042 ATTGACGGTATCCGTGAACCTGTATCTGGTTCTCTTCTTTACGGAAATAACATCATTTCT 41101 Query 174657 GGTGCAGTTGTTCCTAGTTCAAACGCAATCGGTCTACACT 174696 ||||| || |||||| || || |||||| |||||| Sbjct 41102 GGTGCTATTATTCCTACCTCTGCAGCTATCGGTTTACACT 41141 >seq595 Length=533780 Score = 100 bits (110), Expect = 4e-16 Identities = 108/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 176676 GCTCTTAATCTTCGTGCTTATGATTTTGTGAGCCAAGAGATTAGAGCAGCAGAAGATCCT 176735 ||| | ||| | ||||| || |||||||| |||||| ||| | |||||||| ||||| Sbjct 284326 GCTTTAAATTTACGTGCCTACGATTTTGTTTCCCAAGAAATTCGTGCAGCAGAGGATCCA 284267 Query 176736 GAGTTTGAAACTTTCTACACAAAGAACATCCTTCTTAACGAAGGACTAAGAGCATGGATG 176795 || ||||||||||| || ||||| || || | | || ||||| | ||||| |||||| Sbjct 284266 GAATTTGAAACTTTTTATACAAAAAATATTTTATTAAATGAAGGTATTAGAGCTTGGATG 284207 Query 176796 GCACCTGTGGATCAACCACATGA 176818 ||| || ||||| || ||||| Sbjct 284206 GCAGCTCAAGATCAGCCTCATGA 284184 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 729891853515560