Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marchantia_20polymorpha_20subsp._20ruderalis_20[genbank_20GCA_5F0016 41455.1_202016-05-10] 4,137 sequences; 205,718,403 total letters Query= NC_026928.1 Length=189418 Score E Sequences producing significant alignments: (Bits) Value seq2878 226 3e-54 seq3792 109 7e-19 seq467 105 8e-18 seq3761 100 3e-16 seq2371 84.2 3e-11 seq164 82.4 9e-11 >seq2878 Length=397857 Score = 226 bits (250), Expect = 3e-54 Identities = 333/469 (71%), Gaps = 2/469 (0%) Strand=Plus/Plus Query 179393 TAACTTTCTTACGGCAGCTGTCTCGACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCT 179452 ||| ||| | || || ||||| || || || || || | | | ||||||| | || | Sbjct 140288 TAATTTTTTAACTGCCGCTGTTTCTACTCCAGCAAATAGTTTAGCTCATTCTTTACTATT 140347 Query 179453 ACTTTGGGGTCCTGAGTCTCAGGGGAATTTCCAGCGGTGGTGCCAACTTGGGGGACTCTG 179512 | | ||||| ||||| | || || |||| || ||||||||| | || || | || Sbjct 140348 ATTATGGGGACCTGAAGCACAAGGTGATTTTACTCGTTGGTGCCAATTAGGTGGTTTATG 140407 Query 179513 GAATTTCGTGGCTCTCCACGGTGCCTTCGCTCTCATTGGTTTCATGCTTAGGCAATTTGA 179572 || ||| || ||||| || ||||| || || | || || || ||| | | |||||||| Sbjct 140408 GACTTTTGTAGCTCTTCATGGTGCATTTGCCTTAATAGGCTTTATGTTACGACAATTTGA 140467 Query 179573 ACTTGCTCGC-CTGATTGGTATCAGACCTTACAATGCGATTGCTTTTTCTGGTCCTATTG 179631 ||||||| | ||| | | | | ||||| ||||| ||||| |||||||| ||||||| Sbjct 140468 ACTTGCTAGATCTGTTCAATTAC-GTCCTTATAATGCAATTGCGTTTTCTGGACCTATTG 140526 Query 179632 CTGTATTCGTCAGTGTTTTCCTCATCTATCCTTTGGGACAGTCCTCTTGGTTTTTCGCGC 179691 |||| || || |||||| || || |||||||| ||||| || ||||||||| || | Sbjct 140527 CTGTTTTTGTATCTGTTTTTCTTATTTATCCTTTAGGACAATCAGGTTGGTTTTTTGCAC 140586 Query 179692 CGTCCTTTGGTGTCGCGGCGATCTTCAGGTTCTTGCTGTTCCTTCAGGGTTTCCACAACT 179751 | |||||||| || || || || || || | || || |||| || || || |||| Sbjct 140587 CTAGTTTTGGTGTAGCTGCAATTTTTAGATTTATTCTTTTTTTTCAAGGCTTTCATAACT 140646 Query 179752 GGACGCTCAACCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGAGGAGCACTGCTCA 179811 |||| | ||||| |||||||||||||| || ||||| | |||| | || || | Sbjct 140647 GGACTTTAAACCCATTCCATATGATGGGTGTCGCTGGAGTTTTAGGTGCTGCTCTTTTAT 140706 Query 179812 GTGCTATCCATGGAGTTACTGTAGAGAATACATTGTATGAAGATGGAGA 179860 | || || || || | |||||| |||||||| || | ||||||||| || Sbjct 140707 GCGCAATTCACGGTGCTACTGTTGAGAATACTTTATTTGAAGATGGTGA 140755 >seq3792 Length=366655 Score = 109 bits (120), Expect = 7e-19 Identities = 119/158 (75%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 178203 TACCGTTTAGGTATGCGCCCCTGGATCTGTGTAGCATACTCTGCTCCAGTAGCAGCAGCA 178262 ||||||||||||||||| || ||||| ||| ||||| || |||||||| || || || Sbjct 281815 TACCGTTTAGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCAGTTGCTGCTGCT 281874 Query 178263 TCGGCAGTATTCCTGGTCTATCCTTTCGGTCAAGGTTCATTTTCTGACGCAATGCCACTT 178322 | || || ||| || |||| ||| | |||||||| || || |||| ||||| | Sbjct 281875 ACTGCTGTTTTCTTGATCTACCCTATTGGTCAAGGAAGTTTCTCAGACGGTATGCCTTTA 281934 Query 178323 GGCATCTCTGGTACATTCAACTACATGCTTGTTTTCCA 178360 || ||||||||||| ||||| | |||| |||| |||| Sbjct 281935 GGTATCTCTGGTACTTTCAATTTCATGACTGTTCTCCA 281972 >seq467 Length=265627 Score = 105 bits (116), Expect = 8e-18 Identities = 126/169 (75%), Gaps = 3/169 (2%) Strand=Plus/Minus Query 178671 AGCACCATGGCATTTAACCTCAATGGATTCAACTTCAACCAGTCCATCCTCGACGGACAA 178730 ||||| ||||| || ||| | ||||| || ||||| ||||| || | | ||| | ||| Sbjct 211267 AGCACTATGGCTTTCAACTTAAATGGTTTTAACTTTAACCAATCTGTTGTTGACAGTCAA 211208 Query 178731 GGACGTGTCCTCAACACATGGGCAGACGTGCTCAACCGTGCCGGTCTCGGCATGGAAGTC 178790 || ||||| | ||||| ||||| || | |||||||||| || || |||||||| Sbjct 211207 GGTCGTGTAATTAACACTTGGGCTGATATTATCAACCGTGCTAACCTTGGTATGGAAGTT 211148 Query 178791 ATGCACGAGCGCAACGCGCACAACTTCCCGCTTGATCTTGCAGCAGCTG 178839 ||||| || || ||||| ||||||||||| || || ||| ||| |||| Sbjct 211147 ATGCATGAACGTAACGCTCACAACTTCCCTCTAGA-CTT--AGCTGCTG 211102 >seq3761 Length=231418 Score = 100 bits (110), Expect = 3e-16 Identities = 109/145 (75%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 177997 CCGTCGCTGGTTCACTCATGTATGGCAACAACATCATCTCTGGTGCAGTTGTTCCATCTT 178056 |||| ||||||| || | || || || |||||||| |||||||| || |||| | | Sbjct 108171 CCGTATCTGGTTCTCTTCTTTACGGAAATAACATCATTTCTGGTGCTATTATTCCTACCT 108230 Query 178057 CCAACGCAATTGGTCTTCACTTCTATCCCATCTGGGAAGCCGCATCACTTGATGAGTGGC 178116 | || || ||| | |||||||| || || |||||||| || || ||||||| ||| Sbjct 108231 CTGCAGCTATCGGTTTACACTTCTACCCTATTTGGGAAGCTGCTTCTGTTGATGAATGGT 108290 Query 178117 TGTATAACGGTGGTCCTTTCCAACT 178141 |||| ||||||||||||| | |||| Sbjct 108291 TGTACAACGGTGGTCCTTACGAACT 108315 >seq2371 Length=186017 Score = 84.2 bits (92), Expect = 3e-11 Identities = 95/125 (76%), Gaps = 2/125 (2%) Strand=Plus/Plus Query 177928 CAGCAACTATCTGT-TTCATCGTCGCCTTCGTCGCTGCTCCCCCTGTGGACATCGACGGC 177986 |||||||| || || ||||| | || || | || ||||| ||||| || || ||||| Sbjct 40992 CAGCAACT-TCAGTATTCATTATTGCTTTTATTGCAGCTCCTCCTGTAGATATTGACGGT 41050 Query 177987 ATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGCAACAACATCATCTCTGGTGCAGTT 178046 ||||||||||| || ||||||| || | || || || |||||||| |||||||| || Sbjct 41051 ATCCGTGAACCTGTATCTGGTTCTCTTCTTTACGGAAATAACATCATTTCTGGTGCTATT 41110 Query 178047 GTTCC 178051 |||| Sbjct 41111 ATTCC 41115 >seq164 Length=700310 Score = 82.4 bits (90), Expect = 9e-11 Identities = 120/170 (71%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 180060 CGTGCTTACGATTTCGTAAGTCAGGAGATCAGAGCAGCAGAAGATCCCGAGTTTGAGACC 180119 ||||| |||||||| || || || || | |||||||| ||||| || ||||| || Sbjct 563863 CGTGCCTACGATTTTGTTTCCCAAGAAATTCGTGCAGCAGAGGATCCAGAATTTGAAACT 563922 Query 180120 TTCTACACCAAGAACATTCTTCTCAATGAAGGACTACGTGCATGGTTGGCACCAGTTGAT 180179 || || || || || ||| | | |||||||| | | || ||| ||||| | ||| Sbjct 563923 TTTTATACAAAAAATATTTTATTAAATGAAGGTATTAGAGCTTGGATGGCAGCTCAAGAT 563982 Query 180180 CAACCACATGAGTCATTCGTATTCCCAGAAGAAGTTCTGCCAAGAGGTAA 180229 || || ||||| | ||||||||||| || ||||||||| | || || Sbjct 563983 CAGCCTCATGAAAATCTTGTATTCCCAGAGGAGGTTCTGCCACGTGGAAA 564032 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 605978261728560