Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marchantia_20polymorpha_20subsp._20ruderalis_20[genbank_20GCA_5F0016 41455.1_202016-05-10] 4,137 sequences; 205,718,403 total letters Query= NC_027130.1 Length=172688 Score E Sequences producing significant alignments: (Bits) Value seq2878 221 1e-52 seq467 140 4e-28 seq3792 127 2e-24 seq3282 109 6e-19 seq1308 107 2e-18 seq3761 95.1 1e-14 seq164 95.1 1e-14 seq595 86.0 7e-12 >seq2878 Length=397857 Score = 221 bits (244), Expect = 1e-52 Identities = 305/424 (72%), Gaps = 2/424 (0%) Strand=Plus/Plus Query 160114 TCATTCTCTTCTTCTTCTCTGGGGTCCTGAGGCTCAAGGGGATTTCGTCAGGTGGATCCA 160173 ||||||| | || | | ||||| ||||| || ||||| ||||| | ||| ||| Sbjct 140333 TCATTCTTTACTATTATTATGGGGACCTGAAGCACAAGGTGATTTTACTCGTTGGTGCCA 140392 Query 160174 ACTTGGGGGACTCTGGAATTTTGTGGCACTCCATGGTGCCTTCGCCCTAATTGGATTCAT 160233 | | || || | |||| |||||| || || |||||||| || ||| |||| || || || Sbjct 140393 ATTAGGTGGTTTATGGACTTTTGTAGCTCTTCATGGTGCATTTGCCTTAATAGGCTTTAT 140452 Query 160234 GCTCCGTCAGTTTGAACTGGCACG-TCTCATCGGTATCCGTCCTTACAATGCTATTGCGT 160292 | | || || |||||||| || | ||| || | | |||||||| ||||| ||||||| Sbjct 140453 GTTACGACAATTTGAACTTGCTAGATCTGTTCAAT-TACGTCCTTATAATGCAATTGCGT 140511 Query 160293 TCTCTGGTCCTATTGCTGTCTTTGTCAGCGTATTCCTCATCTACCCATTGGGTCAGTCCA 160352 | ||||| ||||||||||| ||||| || || || || || || || || || || Sbjct 140512 TTTCTGGACCTATTGCTGTTTTTGTATCTGTTTTTCTTATTTATCCTTTAGGACAATCAG 140571 Query 160353 GTTGGTTTTTCGCTCCGTCCTTTGGGGTGGCAGCAATCTTTAGATTCCTGTTGTTCCTTC 160412 |||||||||| || || ||||| || || ||||| |||||||| | | || ||| Sbjct 140572 GTTGGTTTTTTGCACCTAGTTTTGGTGTAGCTGCAATTTTTAGATTTATTCTTTTTTTTC 140631 Query 160413 AAGGATTTCACAACTGGACGCTTAACCCCTTCCATATGATGGGAGTTGCTGGTATACTAG 160472 |||| ||||| |||||||| | ||||| |||||||||||||| || ||||| | ||| Sbjct 140632 AAGGCTTTCATAACTGGACTTTAAACCCATTCCATATGATGGGTGTCGCTGGAGTTTTAG 140691 Query 160473 GAGGAGCACTGCTCAGTGCCATCCATGGCGTTACTGTAGAGAACACACTGTATGAAGATG 160532 | | || || | | || || || || | |||||| ||||| || | | |||||||| Sbjct 140692 GTGCTGCTCTTTTATGCGCAATTCACGGTGCTACTGTTGAGAATACTTTATTTGAAGATG 140751 Query 160533 GAGA 160536 | || Sbjct 140752 GTGA 140755 >seq467 Length=265627 Score = 140 bits (154), Expect = 4e-28 Identities = 140/181 (77%), Gaps = 3/181 (2%) Strand=Plus/Minus Query 159204 ACCATGGCATTCAACCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGT 159263 || ||||| |||||| | || ||||| ||||| ||||| || | |||| |||| ||| Sbjct 211264 ACTATGGCTTTCAACTTAAATGGTTTTAACTTTAACCAATCTGTTGTTGACAGTCAAGGT 211205 Query 159264 CGTGTGTTGAACACCTGGGCAGATGTACTGAACCGTGCAGGTCTGGGTATGGAAGTTATG 159323 ||||| | ||||| ||||| ||| | | |||||||| || ||||||||||||||| Sbjct 211204 CGTGTAATTAACACTTGGGCTGATATTATCAACCGTGCTAACCTTGGTATGGAAGTTATG 211145 Query 159324 CATGAGCGTAACGCACACAACTTCCCACTCGACCTTGCTGCTGCTGAGTCAACTCCTGTT 159383 ||||| |||||||| ||||||||||| || ||| | ||||||| ||| | |||||| | Sbjct 211144 CATGAACGTAACGCTCACAACTTCCCTCTAGACTTAGCTGCTGTTGA---AGCTCCTGCT 211088 Query 159384 G 159384 | Sbjct 211087 G 211087 >seq3792 Length=366655 Score = 127 bits (140), Expect = 2e-24 Identities = 123/158 (78%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 158733 TACCGCTTAGGTATGCGCCCCTGGATCTGTGTAGCATATTCTGCACCAGTCGCTGCAGCA 158792 ||||| ||||||||||| || ||||| ||| |||||||| || ||||| ||||| || Sbjct 281815 TACCGTTTAGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCAGTTGCTGCTGCT 281874 Query 158793 TCTGCTGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCCGATGCTATGCCTCTT 158852 ||||||| ||| | |||| ||| | |||||||| |||||| || | ||||||| | Sbjct 281875 ACTGCTGTTTTCTTGATCTACCCTATTGGTCAAGGAAGTTTCTCAGACGGTATGCCTTTA 281934 Query 158853 GGTATCTCTGGTACTTTTAACTACATGCTTGTATTCCA 158890 ||||||||||||||||| || | |||| ||| |||| Sbjct 281935 GGTATCTCTGGTACTTTCAATTTCATGACTGTTCTCCA 281972 >seq3282 Length=366234 Score = 109 bits (120), Expect = 6e-19 Identities = 107/138 (78%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 159204 ACCATGGCATTCAACCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGT 159263 || ||||| |||||| | || ||||| ||||| ||||| || | |||| |||| ||| Sbjct 190916 ACTATGGCTTTCAACTTAAATGGTTTTAACTTTAACCAATCTGTTGTTGACAGTCAAGGT 190975 Query 159264 CGTGTGTTGAACACCTGGGCAGATGTACTGAACCGTGCAGGTCTGGGTATGGAAGTTATG 159323 ||||| | ||||| ||||| ||| | | |||||||| || ||||||||||||||| Sbjct 190976 CGTGTAATTAACACTTGGGCTGATATTATCAACCGTGCTAACCTTGGTATGGAAGTTATG 191035 Query 159324 CATGAGCGTAACGCACAC 159341 ||||| |||||||| ||| Sbjct 191036 CATGAACGTAACGCTCAC 191053 >seq1308 Length=500924 Score = 107 bits (118), Expect = 2e-18 Identities = 101/128 (79%), Gaps = 3/128 (2%) Strand=Plus/Minus Query 159257 TCAGGGTCGTGTGTTGAACACCTGGGCAGATGTACTGAACCGTGCAGGTCTGGGTATGGA 159316 ||| |||||||| | ||||| ||||| ||| | | |||||||| || |||||||| Sbjct 59770 TCAAGGTCGTGTAATTAACACTTGGGCTGATATTATCAACCGTGCTAACCTTGGTATGGA 59711 Query 159317 AGTTATGCATGAGCGTAACGCACACAACTTCCCACTCGACCTTGCTGCTGCTGAGTCAAC 159376 |||||||||||| |||||||| ||||||||||| || ||| | ||||||| ||| | | Sbjct 59710 AGTTATGCATGAACGTAACGCTCACAACTTCCCTCTAGACTTAGCTGCTGTTGA---AGC 59654 Query 159377 TCCTGTTG 159384 ||||| || Sbjct 59653 TCCTGCTG 59646 >seq3761 Length=231418 Score = 95.1 bits (104), Expect = 1e-14 Identities = 108/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 158527 CCGTCGCTGGTTCACTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTACCATCTT 158586 |||| ||||||| || | || || || |||||||| |||||||| || | || | | Sbjct 108171 CCGTATCTGGTTCTCTTCTTTACGGAAATAACATCATTTCTGGTGCTATTATTCCTACCT 108230 Query 158587 CCAACGCAATTGGTCTTCACTTCTATCCCATCTGGGAAGCCGCATCACTTGATGAGTGGC 158646 | || || ||| | |||||||| || || |||||||| || || ||||||| ||| Sbjct 108231 CTGCAGCTATCGGTTTACACTTCTACCCTATTTGGGAAGCTGCTTCTGTTGATGAATGGT 108290 Query 158647 TGTATAACGGTGGTCCTTTCCAACT 158671 |||| ||||||||||||| | |||| Sbjct 108291 TGTACAACGGTGGTCCTTACGAACT 108315 >seq164 Length=700310 Score = 95.1 bits (104), Expect = 1e-14 Identities = 121/167 (72%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 160730 AATCTTCGTGCTTACGATTTCGTGAGTCAAGAGATTAGAGCAGCAGAAGATCCAGAATTT 160789 ||| | ||||| |||||||| || ||||| ||| | |||||||| |||||||||||| Sbjct 563857 AATTTACGTGCCTACGATTTTGTTTCCCAAGAAATTCGTGCAGCAGAGGATCCAGAATTT 563916 Query 160790 GAGACCTTCTACACCAAGAACATCCTACTGAATGAAGGACTACGTGCATGGTTAGCACCT 160849 || || || || || || || || || | |||||||| | | || ||| | ||| || Sbjct 563917 GAAACTTTTTATACAAAAAATATTTTATTAAATGAAGGTATTAGAGCTTGGATGGCAGCT 563976 Query 160850 GCCGACCAACCCCATGAGAACTTTATCTTCCCAGAAGAAGTTCTTcc 160896 || || || ||||| || || | |||||||| || ||||| || Sbjct 563977 CAAGATCAGCCTCATGAAAATCTTGTATTCCCAGAGGAGGTTCTGCC 564023 >seq595 Length=533780 Score = 86.0 bits (94), Expect = 7e-12 Identities = 116/162 (72%), Gaps = 0/162 (0%) Strand=Plus/Minus Query 160705 TATTGGCATTATTGGTCTTGCTCTCAATCTTCGTGCTTACGATTTCGTGAGTCAAGAGAT 160764 |||||| || | ||| | ||| | ||| | ||||| |||||||| || ||||| || Sbjct 284345 TATTGGGGTTGTAGGTTTAGCTTTAAATTTACGTGCCTACGATTTTGTTTCCCAAGAAAT 284286 Query 160765 TAGAGCAGCAGAAGATCCAGAATTTGAGACCTTCTACACCAAGAACATCCTACTGAATGA 160824 | | |||||||| |||||||||||||| || || || || || || || || | ||||| Sbjct 284285 TCGTGCAGCAGAGGATCCAGAATTTGAAACTTTTTATACAAAAAATATTTTATTAAATGA 284226 Query 160825 AGGACTACGTGCATGGTTAGCACCTGCCGACCAACCCCATGA 160866 ||| | | || ||| | ||| || || || || ||||| Sbjct 284225 AGGTATTAGAGCTTGGATGGCAGCTCAAGATCAGCCTCATGA 284184 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 552445030208960