Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marchantia_20polymorpha_20subsp._20ruderalis_20[genbank_20GCA_5F0016 41455.1_202016-05-10] 4,137 sequences; 205,718,403 total letters Query= NC_027132.1 Length=190768 Score E Sequences producing significant alignments: (Bits) Value seq2878 241 2e-58 seq467 140 4e-28 seq3792 134 2e-26 seq3282 116 5e-21 seq3761 109 7e-19 seq2371 104 3e-17 seq1308 104 3e-17 >seq2878 Length=397857 Score = 241 bits (266), Expect = 2e-58 Identities = 343/483 (71%), Gaps = 0/483 (0%) Strand=Plus/Plus Query 180191 TAACTTTCTTACGGCAGCTGTCTCGACGCCTGCTGACGCTATGGGTCATTCTCTTCTTCT 180250 ||| ||| | || || ||||| || || || || | | | | ||||||| | || | Sbjct 140288 TAATTTTTTAACTGCCGCTGTTTCTACTCCAGCAAATAGTTTAGCTCATTCTTTACTATT 140347 Query 180251 ACTTTGGGGTCCTGAGTCTCAGGGGAATTTCCAACGGTGGTGCCAACTTGGGGGACTCTG 180310 | | ||||| ||||| | || || |||| || ||||||||| | || || | || Sbjct 140348 ATTATGGGGACCTGAAGCACAAGGTGATTTTACTCGTTGGTGCCAATTAGGTGGTTTATG 140407 Query 180311 GAATTTCGTGGCTCTCCACGGTGCCTTCGCCCTAATTGGATTTATGCTACGCCAGTTTGA 180370 || ||| || ||||| || ||||| || ||| |||| || |||||| |||| || ||||| Sbjct 140408 GACTTTTGTAGCTCTTCATGGTGCATTTGCCTTAATAGGCTTTATGTTACGACAATTTGA 140467 Query 180371 ACTGGCACGTCTTATTGGTATCCGTCCTTACAATGCTATTGCATTCTCTGGTCCTATCGC 180430 ||| || | | || | |||||||| ||||| ||||| || ||||| ||||| || Sbjct 140468 ACTTGCTAGATCTGTTCAATTACGTCCTTATAATGCAATTGCGTTTTCTGGACCTATTGC 140527 Query 180431 TGTATTTGTCAGCGTATTTCTCATCTACCCACTGGGTCAGTCCAGTTGGTTCTTTGCTCC 180490 ||| ||||| || ||||| || || || | || || || ||||||| ||||| || Sbjct 140528 TGTTTTTGTATCTGTTTTTCTTATTTATCCTTTAGGACAATCAGGTTGGTTTTTTGCACC 140587 Query 180491 CTCTTTTGGGGTAGCAGCAATCTTTAGATTCCTACTCTTTCTTCAGGGTTTCCACAACTG 180550 |||||| ||||| ||||| |||||||| | || ||| |||| || || || ||||| Sbjct 140588 TAGTTTTGGTGTAGCTGCAATTTTTAGATTTATTCTTTTTTTTCAAGGCTTTCATAACTG 140647 Query 180551 GACCCTCAACCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGTGGAGCATTGCTATC 180610 ||| | ||||| |||||||||||||| || ||||| | |||||| || | ||| Sbjct 140648 GACTTTAAACCCATTCCATATGATGGGTGTCGCTGGAGTTTTAGGTGCTGCTCTTTTATG 140707 Query 180611 AGCAATCCATGGCGTAACTGTGGAGAACACACTGTATGAAGATGGAGAACAAGCAAACAC 180670 ||||| || || | ||||| ||||| || | | ||||||||| || |||||||| Sbjct 140708 CGCAATTCACGGTGCTACTGTTGAGAATACTTTATTTGAAGATGGTGATGGTGCAAACAC 140767 Query 180671 CTT 180673 || Sbjct 140768 ATT 140770 >seq467 Length=265627 Score = 140 bits (154), Expect = 4e-28 Identities = 139/180 (77%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 179686 ACCATGGCGTTCAACCTCAACGGTTTCAACTTCAACCAGTCCATCCTTGACGGTCAAGGA 179745 || ||||| |||||| | || ||||| ||||| ||||| || | ||||| ||||||| Sbjct 211264 ACTATGGCTTTCAACTTAAATGGTTTTAACTTTAACCAATCTGTTGTTGACAGTCAAGGT 211205 Query 179746 CGTGTCCTTAACACATGGGCGGACGTATTGAACCGTGCAGGTTTGGGTATGGAAGTTATG 179805 ||||| ||||||| ||||| || | | |||||||| | ||||||||||||||| Sbjct 211204 CGTGTAATTAACACTTGGGCTGATATTATCAACCGTGCTAACCTTGGTATGGAAGTTATG 211145 Query 179806 CATGAGCGTAACGCACACAACTTCCCACTCGACCTTGCTGCTGCTGAGTCTACACCTGTA 179865 ||||| |||||||| ||||||||||| || ||| | ||||||| ||| || | ||||| Sbjct 211144 CATGAACGTAACGCTCACAACTTCCCTCTAGACTTAGCTGCTGTTGAAGCTCCTGCTGTA 211085 >seq3792 Length=366655 Score = 134 bits (148), Expect = 2e-26 Identities = 125/159 (79%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 179214 TTACCGTCTAGGTATGCGTCCATGGATCTGTGTTGCATACTCTGCACCAGTCGCTGCTGC 179273 ||||||| ||||||||||||| ||||| ||||||||| || || ||||| |||||||| Sbjct 281814 TTACCGTTTAGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCAGTTGCTGCTGC 281873 Query 179274 GAGTGCAGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGATGCTATGCCTCT 179333 | ||| || ||| | |||| ||| | |||||||| |||||| || | ||||||| | Sbjct 281874 TACTGCTGTTTTCTTGATCTACCCTATTGGTCAAGGAAGTTTCTCAGACGGTATGCCTTT 281933 Query 179334 TGGTATCTCTGGTACTTTTAACTACATGCTTGTATTCCA 179372 ||||||||||||||||| || | |||| ||| |||| Sbjct 281934 AGGTATCTCTGGTACTTTCAATTTCATGACTGTTCTCCA 281972 >seq3282 Length=366234 Score = 116 bits (128), Expect = 5e-21 Identities = 129/170 (76%), Gaps = 4/170 (2%) Strand=Plus/Plus Query 179656 GGCATCTGGTTCACTGCTCTTGGCGTGTCA--ACCATGGCGTTCAACCTCAACGGTTTCA 179713 || || ||||| |||||| | || | ||| || ||||| |||||| | || ||||| | Sbjct 190886 GGTATTTGGTTTACTGCTTTAGG--TATCAGCACTATGGCTTTCAACTTAAATGGTTTTA 190943 Query 179714 ACTTCAACCAGTCCATCCTTGACGGTCAAGGACGTGTCCTTAACACATGGGCGGACGTAT 179773 |||| ||||| || | ||||| ||||||| ||||| ||||||| ||||| || | Sbjct 190944 ACTTTAACCAATCTGTTGTTGACAGTCAAGGTCGTGTAATTAACACTTGGGCTGATATTA 191003 Query 179774 TGAACCGTGCAGGTTTGGGTATGGAAGTTATGCATGAGCGTAACGCACAC 179823 | |||||||| | |||||||||||||||||||| |||||||| ||| Sbjct 191004 TCAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAACGCTCAC 191053 >seq3761 Length=231418 Score = 109 bits (120), Expect = 7e-19 Identities = 111/145 (77%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 179009 CCGTCGCTGGTTCACTCATGTATGGAAACAACATCATCTCTGGTGCTGTTGTCCCAAGTT 179068 |||| ||||||| || | || ||||| |||||||| ||||||||| || | || | | Sbjct 108171 CCGTATCTGGTTCTCTTCTTTACGGAAATAACATCATTTCTGGTGCTATTATTCCTACCT 108230 Query 179069 CAAACGCAATTGGTCTACACTTCTACCCCATCTGGGAAGCAGCATCACTCGATGAGTGGC 179128 | || || ||| ||||||||||||| || |||||||| || || | ||||| ||| Sbjct 108231 CTGCAGCTATCGGTTTACACTTCTACCCTATTTGGGAAGCTGCTTCTGTTGATGAATGGT 108290 Query 179129 TGTATAACGGTGGTCCTTTCCAACT 179153 |||| ||||||||||||| | |||| Sbjct 108291 TGTACAACGGTGGTCCTTACGAACT 108315 >seq2371 Length=186017 Score = 104 bits (114), Expect = 3e-17 Identities = 114/149 (77%), Gaps = 2/149 (1%) Strand=Plus/Plus Query 178942 GCAACTATCTGT-TTCATCGTTGCTTTCGTAGCAGCACCTCCCGTCGATATTGACGGCAT 179000 |||||| || || ||||| ||||||| | ||||| ||||| || ||||||||||| || Sbjct 40994 GCAACT-TCAGTATTCATTATTGCTTTTATTGCAGCTCCTCCTGTAGATATTGACGGTAT 41052 Query 179001 CCGTGAACCCGTCGCTGGTTCACTCATGTATGGAAACAACATCATCTCTGGTGCTGTTGT 179060 ||||||||| || ||||||| || | || ||||| |||||||| ||||||||| || | Sbjct 41053 CCGTGAACCTGTATCTGGTTCTCTTCTTTACGGAAATAACATCATTTCTGGTGCTATTAT 41112 Query 179061 CCCAAGTTCAAACGCAATTGGTCTACACT 179089 || | || || || ||| |||||| Sbjct 41113 TCCTACCTCTGCAGCTATCGGTTTACACT 41141 >seq1308 Length=500924 Score = 104 bits (114), Expect = 3e-17 Identities = 99/127 (78%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 179739 TCAAGGACGTGTCCTTAACACATGGGCGGACGTATTGAACCGTGCAGGTTTGGGTATGGA 179798 |||||| ||||| ||||||| ||||| || | | |||||||| | |||||||| Sbjct 59770 TCAAGGTCGTGTAATTAACACTTGGGCTGATATTATCAACCGTGCTAACCTTGGTATGGA 59711 Query 179799 AGTTATGCATGAGCGTAACGCACACAACTTCCCACTCGACCTTGCTGCTGCTGAGTCTAC 179858 |||||||||||| |||||||| ||||||||||| || ||| | ||||||| ||| || | Sbjct 59710 AGTTATGCATGAACGTAACGCTCACAACTTCCCTCTAGACTTAGCTGCTGTTGAAGCTCC 59651 Query 179859 ACCTGTA 179865 ||||| Sbjct 59650 TGCTGTA 59644 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 610298038330560