Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marchantia_20polymorpha_20subsp._20ruderalis_20[genbank_20GCA_5F0016 41455.1_202016-05-10] 4,137 sequences; 205,718,403 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq470 87.8 1e-12 >seq470 Length=504015 Score = 87.8 bits (96), Expect = 1e-12 Identities = 93/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 41079 CAGTTTTACGTTTGCAATGGTGAACTGTCATGTCAATTGTATCAAAGATCAGGTGACATG 41138 ||||||||||| ||| || || || ||||||||| |||| ||| | ||| |||| ||| Sbjct 117092 CAGTTTTACGTGGCCAACGGAGAGCTATCATGTCAAATGTACCAACGCTCATGTGATATG 117151 Query 41139 GGACTAGGGGTCCCGTTTAACATAGCGAGTTATGCTCTGCTCACGTATATGATTGCACAC 41198 ||| |||| || || | |||||||| || | || ||||| || |||||||| ||| Sbjct 117152 GGATTAGGAGTACCCTACAACATAGCCTCCTACTCCCTCCTCACCTACATGATTGCTCAC 117211 Query 41199 GTT 41201 ||| Sbjct 117212 GTT 117214 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397435960392685