Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marchantia_20polymorpha_20subsp._20ruderalis_20[genbank_20GCA_5F0016 41455.1_202016-05-10] 4,137 sequences; 205,718,403 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq1018 145 1e-29 seq594 98.7 1e-15 >seq1018 Length=294332 Score = 145 bits (160), Expect = 1e-29 Identities = 256/369 (69%), Gaps = 8/369 (2%) Strand=Plus/Minus Query 11450 CGATCAAAACGACCCGGGCGAAGGAGGGCGTCATCAAGGATATCCACGCGATTAGTGGCC 11509 |||||||| || || || ||||| || || | || |||||||| | ||||| ||||| Sbjct 234732 CGATCAAATCGTCCAGGTCGAAGCAGAGCAGCGTCGAGGATATCAGCCCGATTGGTGGCG 234673 Query 11510 GCAATAACCACAATGCCAGTCTCATTGTCAAAGCCATCCATCTCGGTGAGTAATTGATTA 11569 |||| ||| | ||| || || | | ||||| |||||||| || || || | || || Sbjct 234672 GCAACAACAATAATTCCGGTGTTACCCTCAAATCCATCCATTTCAGTCAGAAGCTGGTTC 234613 Query 11570 ATTGTTTGTTCTCTCTCATCATTTGCTGGCATACC---ACCAGCACTGCGTTGCTTGCCC 11626 | |||||||||||||| ||||| || ||| ||| | || | ||| | || Sbjct 234612 AGAGTTTGTTCTCTCTCGTCATTGCCT---CCACCGATACCGGTACCCCTCTGCCTTCCG 234556 Query 11627 ACCGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAG 11686 || |||||||||||||| | ||| ||||| || || |||||| ||| | | ||| Sbjct 234555 ACGGCATCAATCTCATCCACGAACACAATGCAAGGAGCATTTTCCTTGGCCTTCTTGAAG 234496 Query 11687 AGATCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGTTTGCGGCAGAG 11746 ||||| | || | | || ||||||||||||||||| ||||| || | | |||| Sbjct 234495 AGATCCCTCACTCGTGATGCTCCCACACCAACAAACATTTCCACGAACTCAGAACCAGA- 234437 Query 11747 CACTG-GATGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTTCC 11805 | || || ||||| || | ||| || || ||||| |||||| || |||||||| Sbjct 234436 AATTGAGAAAAATGGAACTCCAGCTTCGCCAGCAATGGCCTTGGCGAGAAGAGTCTTTCC 234377 Query 11806 CGTACCTGG 11814 || || || Sbjct 234376 TGTTCCGGG 234368 >seq594 Length=317990 Score = 98.7 bits (108), Expect = 1e-15 Identities = 104/137 (76%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 111230 GGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAA 111289 || ||||| ||||| ||||| ||||| || ||| | ||||| | |||||||| | | Sbjct 155743 GGTAGGGCAATTGACGCCAAGTTGCACACCGCCATTTCATCGGGTGCGGTGTACTCCACA 155802 Query 111290 ATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTG 111349 || || ||||||| ||||| ||| |||||||||| |||| |||||||||||| | Sbjct 155803 ATCTCCGTACATAGATTGGATGACTTGATCGTCCCCAGGTTCTGCTGGTTACTCTTCCGG 155862 Query 111350 TTGCACGCATCCTTGTA 111366 ||||| || |||| ||| Sbjct 155863 TTGCATGCGTCCTGGTA 155879 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627999522895200