Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marchantia_20polymorpha_20subsp._20ruderalis_20[genbank_20GCA_5F0016 41455.1_202016-05-10] 4,137 sequences; 205,718,403 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq2175 102 1e-16 >seq2175 Length=296405 Score = 102 bits (112), Expect = 1e-16 Identities = 217/318 (68%), Gaps = 12/318 (4%) Strand=Plus/Minus Query 11891 CGTCTCAAAGGTTGCGGCACATTGGCTCGTGAAGAATTACCGAGAATCCTATGGTCTCTT 11950 ||| || ||||| ||||| || ||| | || ||||| || | ||||| || || Sbjct 211084 CGTGTCCAAGGTCGCGGCGCACTGGTACACCGTCAACTACCGCGAGGCGTATGGCCTGTT 211025 Query 11951 TGCGTGCTCTGGTATTCTCTTCAACCACGAGTCACCCCGTCGTGGCCCGGATTTCGTGAC 12010 || ||| ||| || | |||||||||||||| ||||| | || | ||||||| || Sbjct 211024 CGCCTGCAATGGCATCTTGTTCAACCACGAGTCGCCCCGGAGAGGAGAGAATTTCGTCAC 210965 Query 12011 AAAGAAGATCACC-GA----TGGTATCAAACAA-ATCGTGGCGGGTGAGAGGGAGTTCAT 12064 | |||||||||| || ||| | ||| |||| || | ||| | || | | Sbjct 210964 CAGGAAGATCACCAGAGCCGTGGGCAGGATCAAGATCG--GCCTGC-AGAAGAAGCTGTT 210908 Query 12065 TGAATTGGGGAACCTCAACGCCGAGAGGGACTGGGGACATGCCAAGGACTATGTTGAAGC 12124 | | ||||||||||| ||| |||||| ||||| |||| || || || || || Sbjct 210907 TC---TCGGGAACCTCAAGGCCTCGAGGGATTGGGGCTTTGCCGGAGATTACGTCGAGGC 210851 Query 12125 CATGTGGCTCGTACTTCAACAAGAAGAGGCGGACGAATATGTCGTCGCGACGGGGGAGAC 12184 |||||||||| | || || || || || | ||||| |||||||| || || | ||| | Sbjct 210850 CATGTGGCTCATGCTGCAGCAGGACAAGCCCGACGACTATGTCGTGGCCACAGAGGACTC 210791 Query 12185 ACACTCCGTCAGGGAGTT 12202 ||| ||||| |||||| Sbjct 210790 GCACACCGTCGAGGAGTT 210773 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618403219169720