Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marchantia_20polymorpha_20subsp._20ruderalis_20[genbank_20GCA_5F0016 41455.1_202016-05-10] 4,137 sequences; 205,718,403 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq1018 174 2e-38 >seq1018 Length=294332 Score = 174 bits (192), Expect = 2e-38 Identities = 268/375 (71%), Gaps = 12/375 (3%) Strand=Plus/Minus Query 9520 CTTACGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGT 9579 || ||||||||| || || || ||||| || || | || ||||||||| | ||||| || Sbjct 234736 CTGACGATCAAATCGTCCAGGTCGAAGCAGAGCAGCGTCGAGGATATCAGCCCGATTGGT 234677 Query 9580 CGCGGCGATGACAACAATACCTGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTG 9639 ||||| | |||| ||| || || | | ||||| |||||||| || |||| ||| || Sbjct 234676 GGCGGCAACAACAATAATTCCGGTGTTACCCTCAAATCCATCCATTTCAGTCAGAAGCTG 234617 Query 9640 GTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATACC---ACCAGCACTGCGTTGCTT 9696 ||| | ||||||||| | || ||||| || ||| ||| | || | ||| | Sbjct 234616 GTTCAGAGTTTGTTCTCTCTCGTCATTGCCTCC---ACCGATACCGGTACCCCTCTGCCT 234560 Query 9697 TCCCACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTC 9756 ||| ||||||||||||||||| | ||| || ||||| || |||||| | | | |||| Sbjct 234559 TCCGACGGCATCAATCTCATCCACGAACACAATGCAAGGAGCATTTTC-CTTG-GCCTTC 234502 Query 9757 --AAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCG 9814 |||||||||| || || || ||||||||||||||||| ||||| || | | Sbjct 234501 TTGAAGAGATCCCTCACTCGTGATGCTCCCACACCAACAAACATTTCCACGAACTCAGAA 234442 Query 9815 GCGGAACATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGT 9873 | ||| |||| || || || || || ||| || |||||||| |||||||||||| Sbjct 234441 CCAGAA-ATTGAGAAAAATGGAACTCCAGCTTCGCCAGCAATGGCCTTGGCGAGAAGAGT 234383 Query 9874 CTTACCCGTACCTGG 9888 ||| || || || || Sbjct 234382 CTTTCCTGTTCCGGG 234368 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583230638125880