Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marchantia_20polymorpha_20subsp._20ruderalis_20[genbank_20GCA_5F0016 41455.1_202016-05-10] 4,137 sequences; 205,718,403 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq594 102 9e-17 >seq594 Length=317990 Score = 102 bits (112), Expect = 9e-17 Identities = 171/243 (70%), Gaps = 6/243 (2%) Strand=Plus/Plus Query 79512 CGAACCCTTGCGCTTGCCGCCGCCCTGGTTGACGTACCGGGCCGTGTTGTTGAAAACTCG 79571 || ||| || | |||||| || || |||| ||||| || || |||| |||||||||||| Sbjct 156561 CGTACCTTTTCTCTTGCCACCACCTTGGTCTACGTAGCGAGCGGTGTCGTTGAAAACTCG 156620 Query 79572 GAGCATGGGCACGATGCCGTCGGCGACG--CCGTTCGTCCCGTTGATTCGTGTACCGCTC 79629 ||||| |||| |||||| | | |||| || || ||||| |||| ||||| | Sbjct 156621 CAGCATCGGCAGGATGCCATTG--GACGTTCCATTGGTCCCTCTGATGTAGCTACCGGTG 156678 Query 79630 GCCCGAATGTTCGAGCAGTG-GATTCCGATGCCCCCGGACCACTTGGAGATGTGCGCGCA 79688 || |||||||| | | || || |||||| ||||| | |||| | || || Sbjct 156679 GCACGAATGTT-ATGTACTGAGAGTCCGATTCCCCCTGCTGACTTACTTACAACAGCACA 156737 Query 79689 CTCCTTGAGCGTCTCGTAGATGCCCTCGATCGAGTCGTCCTTCATAGCGACCAGGAAGCA 79748 |||||| | || ||||| || |||||||| |||||| ||||| || || ||||| Sbjct 156738 CTCCTTCAAAGTGTCGTAAATTCCCTCGATGCTGTCGTCTTTCATGCAGATTAGAAAGCA 156797 Query 79749 GCT 79751 ||| Sbjct 156798 GCT 156800 Score = 87.8 bits (96), Expect = 2e-12 Identities = 83/106 (78%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 78534 GTAGATGTTGGTCGTGTACGGCTCGAAAGCCTCGTTGTTCCCCATGATCTGGGCGGTCGA 78593 ||| ||||||| |||||||||||||||| || |||||||| | |||||| || || Sbjct 154822 GTAAATGTTGGACGTGTACGGCTCGAAACATTCATTGTTCCCAAGAATCTGGCTTGTAGA 154881 Query 78594 GGCGGTCGGCATGGGTGCGACCAGTAGAGAATTCCGAAGACCATGC 78639 ||| || ||||| || || || || ||||| || |||| ||||||| Sbjct 154882 GGCCGTTGGCATAGGAGCCACGAGCAGAGAGTTGCGAACACCATGC 154927 Score = 87.8 bits (96), Expect = 2e-12 Identities = 78/98 (80%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 20373 TTCGCAACTCGTTGCTCGTCGCGCCCATGCCGACCGCCTCGACCGCCCAGATCATGGGGA 20432 |||||||||| ||||||| || || ||||| || ||||| || |||||| | |||| Sbjct 154919 TTCGCAACTCTCTGCTCGTGGCTCCTATGCCAACGGCCTCTACAAGCCAGATTCTTGGGA 154860 Query 20433 ACAACGAGGCTTTCGAGCCGTACACGACCAACATCTAC 20470 |||| || |||||||||||||||| ||||||| ||| Sbjct 154859 ACAATGAATGTTTCGAGCCGTACACGTCCAACATTTAC 154822 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548496434411280