Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marchantia_20polymorpha_20subsp._20ruderalis_20[genbank_20GCA_5F0016 41455.1_202016-05-10] 4,137 sequences; 205,718,403 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq3838 109 6e-19 seq2917 100 3e-16 >seq3838 Length=746898 Score = 109 bits (120), Expect = 6e-19 Identities = 161/223 (72%), Gaps = 5/223 (2%) Strand=Plus/Minus Query 159000 CTGTTGGAGCATGAGCCACATGGCCTCGACGTAATCCTGCGCGTGACCCCAGTCGCGCTT 159059 ||| || |||||||||||||||||||||||||| || ||| |||||||||||| Sbjct 296149 CTGCTGCAGCATGAGCCACATGGCCTCGACGTAGTCGCCGGCGAACCCCCAGTCGCGCGA 296090 Query 159060 GGCATCCATGTTCCCGAGCTCGATGA-CTTTTCCAGACTT-TTTCCACTCAGCCAGAC-- 159115 || | || ||| || || | | ||| | ||| | ||| | || ||| || Sbjct 296089 CGCCTTCAGGTTGCCCAGGTACACCTTCTTCTGCAGCCCGATTTTGATTC-GCCCCACGG 296031 Query 159116 CGAGCGTGATCTTGCGCGTCACAAACTCTGCTCCGCGCCGTTCCGACTCATGGTTAAACA 159175 || ||||||||||||||||||| || | |||||||||| |||||| ||||| || | Sbjct 296030 CGCGCGTGATCTTGCGCGTCACGAAGTTCTCTCCGCGCCGCGGCGACTCGTGGTTGAAGA 295971 Query 159176 GAATGCCGGTACAAGCGAACAGGTTATAGGACTCGCGGTAATT 159218 | |||||| | || ||||| || |||| ||||||||| || Sbjct 295970 GGATGCCGTTGCAGGCGAAGAGCCCGTAGGCCTCGCGGTAGTT 295928 >seq2917 Length=31685 Score = 100 bits (110), Expect = 3e-16 Identities = 186/268 (69%), Gaps = 9/268 (3%) Strand=Plus/Plus Query 124507 TGTGCGTCTCACCCGTGCCAATCACGAAATCTTCGGGAATCGACTGCTGCAACATAAGCC 124566 |||||| || | ||| | | |||| | || ||||| || |||||||| ||| |||| Sbjct 12783 TGTGCGAGTCCTCGGTGGCCACCACGTAGTCGTCGGGCTTCTCCTGCTGCAGCATGAGCC 12842 Query 124567 ACATGGCTTGGACGTAGTCCTCTGCGTGCCCCCAGTCGCGCTTGGCATCCAGGTTTCCGA 124626 ||||||| | ||||||||| | ||| |||||||| | || | |||||| |||| Sbjct 12843 ACATGGCCTCGACGTAGTCGCCGGCGAATCCCCAGTCCCTGGACGCCTTCAGGTTCCCGA 12902 Query 124627 GCTCGAT-TGGCTT----GGCCGTC-TTGTTCCACTCCGCCAAACCCAGTGTAATCTTGC 124680 | | | | ||| ||||| | ||| ||| ||| ||| | | || || |||| Sbjct 12903 GATACAGCTTGCTCTGCAGGCCGACCTTGATCCG-TCC--CAAGGCTCGGGTGATTTTGC 12959 Query 124681 GCGTCACAAACTCGGAACCGCGTCGCTCAGACTCGTGGTTGAACAGAATGCCAGTACACG 124740 | || || || | || || ||| |||||||||||||| |||||||| |||| | Sbjct 12960 GTGTGACGAAGTTCTCTCCTCGGCGCGGCGACTCGTGGTTGAAAAGAATGCCGTTACAGG 13019 Query 124741 CAAACATCCCGTACGACTCGCGGTAGTT 124768 | |||| || |||| |||||||||||| Sbjct 13020 CGAACAGGCCATACGCCTCGCGGTAGTT 13047 Score = 96.9 bits (106), Expect = 4e-15 Identities = 188/271 (69%), Gaps = 15/271 (6%) Strand=Plus/Minus Query 124507 TGTGCGTCTCACCCGTGCCAATCACGAAATCTTCGGGAATCGACTGCTGCAACATAAGCC 124566 |||||| || | ||| | | |||| | || ||||| || |||||||| ||| |||| Sbjct 17517 TGTGCGAGTCCTCGGTGGCCACCACGTAGTCGTCGGGCTTCTCCTGCTGCAGCATGAGCC 17458 Query 124567 ACATGGCTTGGACGTAGTCCTCTGCGTGCCCCCAGTCGCGCTTGGCATCCAGGTTTCCGA 124626 ||||||| | ||||||||| | ||| |||||||| | || | |||||| |||| Sbjct 17457 ACATGGCCTCGACGTAGTCGCCGGCGAATCCCCAGTCCCTGGACGCCTTCAGGTTCCCGA 17398 Query 124627 GCT-CGATTGGCT----TGGCCG-TCTTGTTCCACTCCGCCAAACCCAGTGTAATCTTGC 124680 | | | | ||| ||||| |||| ||| || |||| | | || || |||| Sbjct 17397 GATACAGCTTGCTCTGCAGGCCGACCTTGATCC-GTC--CCAAGGCTCGGGTGATTTTGC 17341 Query 124681 GCGTCACAAA---CTCGGAACCGCGTCGCTCAGACTCGTGGTTGAACAGAATGCCAGTAC 124737 |||| || || |||| || || ||| |||||||||||||| || ||||| | | Sbjct 17340 GCGTGACGAAGTTCTCG---CCTCGGCGCGGCGACTCGTGGTTGAAGAGGATGCCGTTGC 17284 Query 124738 ACGCAAACATCCCGTACGACTCGCGGTAGTT 124768 | || |||| || |||| |||||||||||| Sbjct 17283 AGGCGAACAGGCCATACGCCTCGCGGTAGTT 17253 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547187702092600