Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marchantia_20polymorpha_20subsp._20ruderalis_20[genbank_20GCA_5F0016 41455.1_202016-05-10] 4,137 sequences; 205,718,403 total letters Query= NC_028653.1 Length=67617 Score E Sequences producing significant alignments: (Bits) Value seq1013 104 1e-17 >seq1013 Length=3715 Score = 104 bits (114), Expect = 1e-17 Identities = 173/249 (69%), Gaps = 12/249 (5%) Strand=Plus/Minus Query 40891 CGGGTCGATGAACCGCTCGAA---CTGCATGAGCGGGAACTCCATCGGGTCGACCTCGGT 40947 ||||| | |||||||||||| | || || || ||| ||||||||| ||||| Sbjct 1317 CGGGTTCAGGAACCGCTCGAAGATCAGCTTGTGCCGGA------TCGGGTCGAGGTCGGT 1264 Query 40948 GATGCGCAGCAGGAAGCAGACCAGCGACCCGGCAGCCGACCCGCGGCCGGGACCGACCCC 41007 ||||| ||| | | || ||||||||| || || ||||| || |||||||| ||| | Sbjct 1263 GATGCCCAGGACGTAGGCGACCAGCGAGCCCGCCGCCGAGCCACGGCCGGGGCCGCAGCG 1204 Query 41008 CATCTTCGCGACGTCCTTGGCCCACCGGACCAGGTCCGCGGTGACCAGGAAGTAGTCGCA 41067 || |||| |||||| | ||| ||||||||||| |||||||||||| || Sbjct 1203 GATGC---CGACCGACTTGGCGTGCTGGATGAGGTCCGCGGTCACCAGGAAGTAGCCGGG 1147 Query 41068 GAACCCCTTCTCGTCGAGCATCCCGAACTCGTAGTGGATCCGCTCCAGGTAGGCATCGGT 41127 | | ||| ||| | || | |||| |||||||| | | ||| | |||| ||||| Sbjct 1146 GTAGCCCATCTTGATGATGACGCCGACCTCGTAGTTGGCCTGCTGCCGGTACTTCTCGGT 1087 Query 41128 GTCGACGTC 41136 | || |||| Sbjct 1086 GACGCCGTC 1078 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 216238696762746