Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marchantia_20polymorpha_20subsp._20ruderalis_20[genbank_20GCA_5F0016 41455.1_202016-05-10] 4,137 sequences; 205,718,403 total letters Query= NC_028663.1 Length=188632 Score E Sequences producing significant alignments: (Bits) Value seq467 131 2e-25 seq3282 118 1e-21 seq3792 111 2e-19 seq1308 102 1e-16 seq2371 89.7 6e-13 seq3761 87.8 2e-12 seq1921 86.0 8e-12 seq1178 86.0 8e-12 >seq467 Length=265627 Score = 131 bits (144), Expect = 2e-25 Identities = 128/165 (78%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 176936 GCACAATGGCATTCAACCTTAACGGTTTCAACTTCAACCAGTCTGTCTTAGACAACTCTG 176995 |||| ||||| |||||| | || ||||| ||||| ||||| ||||| | |||| | Sbjct 211266 GCACTATGGCTTTCAACTTAAATGGTTTTAACTTTAACCAATCTGTTGTTGACAGTCAAG 211207 Query 176996 GTAAAGTGATTCCTACATGGGGAGATATCCTTAACCGTGCAAACCTTGGTATGGAAGTTA 177055 || || ||| || |||| ||||| | |||||||| ||||||||||||||||||| Sbjct 211206 GTCGTGTAATTAACACTTGGGCTGATATTATCAACCGTGCTAACCTTGGTATGGAAGTTA 211147 Query 177056 TGCACGAGCGTAATGCTCACAACTTCCCACTTGACCTTGCTGCTG 177100 |||| || ||||| |||||||||||||| || ||| | ||||||| Sbjct 211146 TGCATGAACGTAACGCTCACAACTTCCCTCTAGACTTAGCTGCTG 211102 >seq3282 Length=366234 Score = 118 bits (130), Expect = 1e-21 Identities = 125/165 (76%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 176911 ATCTGGTTTACTGCAATGGGTGTTTGCACAATGGCATTCAACCTTAACGGTTTCAACTTC 176970 || ||||||||||| | ||| | |||| ||||| |||||| | || ||||| ||||| Sbjct 190889 ATTTGGTTTACTGCTTTAGGTATCAGCACTATGGCTTTCAACTTAAATGGTTTTAACTTT 190948 Query 176971 AACCAGTCTGTCTTAGACAACTCTGGTAAAGTGATTCCTACATGGGGAGATATCCTTAAC 177030 ||||| ||||| | |||| ||| || ||| || |||| ||||| | ||| Sbjct 190949 AACCAATCTGTTGTTGACAGTCAAGGTCGTGTAATTAACACTTGGGCTGATATTATCAAC 191008 Query 177031 CGTGCAAACCTTGGTATGGAAGTTATGCACGAGCGTAATGCTCAC 177075 ||||| ||||||||||||||||||||||| || ||||| |||||| Sbjct 191009 CGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAACGCTCAC 191053 >seq3792 Length=366655 Score = 111 bits (122), Expect = 2e-19 Identities = 121/161 (75%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 176464 AGTTACAGACTAGGCATGCGTCCTTGGATCTGTGTTGCATACTCTGCACCAGTATCTGCA 176523 |||||| | |||| |||||||||||||| ||||||||| || || ||||| |||| Sbjct 281812 AGTTACCGTTTAGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCAGTTGCTGCT 281871 Query 176524 GCGATGGCAGTTTTCCTCGTCTATCCATTCGGTCAAGGATCTTTCTCTGATGGTATGCCT 176583 || | || |||||| | |||| || | ||||||||| |||||| || ||||||||| Sbjct 281872 GCTACTGCTGTTTTCTTGATCTACCCTATTGGTCAAGGAAGTTTCTCAGACGGTATGCCT 281931 Query 176584 CTTGGCATTTCAGGTACATTCAACTTTATGTTTGTATTCCA 176624 | || || || ||||| ||||| || ||| ||| |||| Sbjct 281932 TTAGGTATCTCTGGTACTTTCAATTTCATGACTGTTCTCCA 281972 >seq1308 Length=500924 Score = 102 bits (112), Expect = 1e-16 Identities = 77/91 (85%), Gaps = 0/91 (0%) Strand=Plus/Minus Query 177010 ACATGGGGAGATATCCTTAACCGTGCAAACCTTGGTATGGAAGTTATGCACGAGCGTAAT 177069 || |||| ||||| | |||||||| ||||||||||||||||||||||| || ||||| Sbjct 59751 ACTTGGGCTGATATTATCAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAAC 59692 Query 177070 GCTCACAACTTCCCACTTGACCTTGCTGCTG 177100 |||||||||||||| || ||| | ||||||| Sbjct 59691 GCTCACAACTTCCCTCTAGACTTAGCTGCTG 59661 >seq2371 Length=186017 Score = 89.7 bits (98), Expect = 6e-13 Identities = 76/94 (81%), Gaps = 0/94 (0%) Strand=Plus/Plus Query 176213 TTGCATTTATTGCAGCACCACCTGTCGATATCGACGGTATTCGCGAACCAGTAGCAGGAT 176272 |||| ||||||||||| || ||||| ||||| |||||||| || ||||| ||| | || | Sbjct 41013 TTGCTTTTATTGCAGCTCCTCCTGTAGATATTGACGGTATCCGTGAACCTGTATCTGGTT 41072 Query 176273 CTCTACTCTATGGAAACAACATCATCTCAGGAGC 176306 |||| || || ||||| |||||||| || || || Sbjct 41073 CTCTTCTTTACGGAAATAACATCATTTCTGGTGC 41106 >seq3761 Length=231418 Score = 87.8 bits (96), Expect = 2e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 176263 GTAGCAGGATCTCTACTCTATGGAAACAACATCATCTCAGGAGCAGTCGTCCCAAGCTCA 176322 ||| | || ||||| || || ||||| |||||||| || || || | | || | ||| Sbjct 108173 GTATCTGGTTCTCTTCTTTACGGAAATAACATCATTTCTGGTGCTATTATTCCTACCTCT 108232 Query 176323 AACGCAATCGGACTACACTTCTACCCAATCTGGGAAGCAGCAACAGTTGACGAATGGCTC 176382 || ||||| ||||||||||||| || |||||||| || | ||||| |||||| | Sbjct 108233 GCAGCTATCGGTTTACACTTCTACCCTATTTGGGAAGCTGCTTCTGTTGATGAATGGTTG 108292 Query 176383 TACAATGGAGGACCATACCAACT 176405 ||||| || || || ||| |||| Sbjct 108293 TACAACGGTGGTCCTTACGAACT 108315 >seq1921 Length=72791 Score = 86.0 bits (94), Expect = 8e-12 Identities = 59/67 (88%), Gaps = 0/67 (0%) Strand=Plus/Plus Query 177034 GCAAACCTTGGTATGGAAGTTATGCACGAGCGTAATGCTCACAACTTCCCACTTGACCTT 177093 || ||||||||||||||||||||||| || ||||| |||||||||||||| || ||| | Sbjct 54761 GCCAACCTTGGTATGGAAGTTATGCATGAACGTAACGCTCACAACTTCCCTCTGGACTTA 54820 Query 177094 GCTGCTG 177100 ||||||| Sbjct 54821 GCTGCTG 54827 >seq1178 Length=403868 Score = 86.0 bits (94), Expect = 8e-12 Identities = 85/109 (78%), Gaps = 1/109 (1%) Strand=Plus/Plus Query 19330 TACCGTCAGAGAGATACCGTGGTCGTATACACTATGAG-TTTGACAAGTGTATCGCCTGT 19388 |||| || || ||| ||||||||| | || | ||| ||||| |||||||| || || Sbjct 212921 TACCTTCTGAACGATTTCGTGGTCGTCTTCATTTTGAACTTTGATAAGTGTATTGCTTGC 212980 Query 19389 GAGGTGTGTGTAAGAGTATGCCCTATCAATCTACCAGTGGTGGATTGGG 19437 || || |||||| | |||||||| || ||||||||||| || ||||||| Sbjct 212981 GAAGTCTGTGTACGTGTATGCCCAATAAATCTACCAGTTGTAGATTGGG 213029 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 603463191795840