Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marchantia_20polymorpha_20subsp._20ruderalis_20[genbank_20GCA_5F0016 41455.1_202016-05-10] 4,137 sequences; 205,718,403 total letters Query= NC_028827.1 Length=50165 Score E Sequences producing significant alignments: (Bits) Value seq1013 872 0.0 >seq1013 Length=3715 Score = 872 bits (966), Expect = 0.0 Identities = 1891/2787 (68%), Gaps = 108/2787 (4%) Strand=Plus/Minus Query 38683 CAGACCCTTGCGGGTTGCCCCGGTCGAGTCGAACGCACCGGCCTTGATCAAGGACTCGAT 38742 ||| |||||||||| ||| |||||||||||| || |||||||||| ||||||| Sbjct 2847 CAGGCCCTTGCGGGAGTGGCCGAGCGAGTCGAACGCGCCCGCCTTGATCAGCGACTCGAC 2788 Query 38743 GGCGCGCTTGCTCACGGTGGCCTGAGTCGCTGCCTT---CAAGAAGTCCGGCAGGGAGGT 38799 | | |||| | | | || | |||| |||| || |||||| | | | | Sbjct 2787 GACCTTCTTGTTGCAGACGACC-GCGTCGA--CCTTGCGCAGGAAGTCGGAGAAGTCGAC 2731 Query 38800 GAACTTCCCCCAGGCTTCCCGCAGTTCGGCGA---TCTCGGCGACCATGCCCTCGCCCAC 38856 ||| |||||| |||||| | |||||| || || |||| | | | || || Sbjct 2730 GAAGTTCCCCTTC---TCCCGCCGCGCGGCGACGATCGCGTCGACGACGTTGTGCCCGAC 2674 Query 38857 GTTCTTCACGGCGGTCAGTCCGAAGCGGATCTCGCTCTCCCCGTTCGGGGTGAAGGAGCT 38916 ||| | | || || ||||| ||||| ||| || ||| ||| | |||| || Sbjct 2673 GTTGCGGATGCCGCCGAGGCCGAAACGGATGTCG---TCGCCGACCGGCGCGAAGTTGCG 2617 Query 38917 GTTCGAGACCGACACGTCGGGCGGCAGGACCCGCAGGCCCATGCGCCGCGCCTCGCCGAG 38976 |||| | ||||||||||| |||||| | |||||| || || ||| | || Sbjct 2616 CACCGAGTCGTTGACGTCGGGCGGGAGGACCGTGATGCCCATCCGGCGGCACTCCGCCAG 2557 Query 38977 GTA---CGTGGCCATCTTGTTCTTGTCGTCGCCCACCGAGGTGAGCACGGCCGCCATGTA 39033 ||| || |||| |||| ||||||||||| |||||||||||||||| | |||||||| Sbjct 2556 GTAGACCGCGGCC---TTGTCCTTGTCGTCGCGCACCGAGGTGAGCACGCCGGCCATGTA 2500 Query 39034 CTCGGCCGGGTAGTGCGTCTTCAGGTACGCCGTGCGGTAGGCGATGAGCCCGTACGCCGC 39093 |||||||||||||| || ||| ||||| ||||| | ||| | | | ||||| || || Sbjct 2499 CTCGGCCGGGTAGTTCGCCTTGAGGTAGGCCGTCCAGTACGACACCACGCCGTAGGCGGC 2440 Query 39094 AGAGTGCGCCTTGTTGAAGGCGTACCCGGCGAAGGGTACGAGCACGTCCCACACCGCCTG 39153 ||||| || |||||||||||| ||| ||| || | || | |||||| | | || Sbjct 2439 GGAGTGGGCGCGGTTGAAGGCGTAGTCGGAGAACGGGAGCAGGATGTCCCAGAGAGTCTT 2380 Query 39154 GATGGCGCTGTCCGAGTAGCCTCGCTCGCGCGCTCCCTTCTGGAAGTTCACGAACTCCTT 39213 || ||| | |||||||| || | |||| |||| || ||||||| Sbjct 2379 GACCGCGGCCGCGGAGTAGCCGTTGTCCTTCATGCCCTGGGCGAAGCCGGCGTACTCCTT 2320 Query 39214 GGCCAGAACCTCGGGCTTCTTCTTGCCCATGGCCCGACGCAGCAGGTCGGCCTGGCCCAG 39273 | |||| | ||| ||||||||||||||| || || || |||||||| |||||||| || Sbjct 2319 GTCCAGGATCTCCTTCTTCTTCTTGCCCATCGCGCGGCGGAGCAGGTCCGCCTGGCCGAG 2260 Query 39274 GCTGTAGCCAGCGAGGATCTGCGCCGCCTTCTGCACCTGCTCCTGGTAGATGATGAGCCC 39333 ||||||| || || | |||||| | ||||| |||||||| | ||| || || Sbjct 2259 CGTGTAGCCCGCCAGCACCTGCGCGATGGACATGACCTGTTCCTGGTACACGATCAGGCC 2200 Query 39334 GTACGTCGGGTCCAGGATCTCCCGCAGGGGCTCCTCCACCTCGGGGTGAATCGGCGAGAT 39393 | | ||| | |||| ||| || ||||| ||| ||| ||||| ||||||| ||| Sbjct 2199 GAAGGTCTCACCGAGGACGTCCTTGAGCGGCTCGGCCAGCTCCGGGTGGATCGGCGTGAT 2140 Query 39394 CGCCTGCTGTCCATTCTTCCGGAGGGCATAGTTCGTGTGTGAGCCAACGCCC--ATCGGA 39451 | ||||| | || ||||| ||| ||| |||| ||| |||| || ||||| ||||| Sbjct 2139 CTCCTGCCGGCCGTTCTTGCGGTCGGCGTAGT-CGT-TGTGCGCGTTCGCCCCCATCGGG 2082 Query 39452 CCCGGACGGTACAGCGCGACGACGGCCGAGATGTCCTCGAAGTTGTCGGGCTTCAGCAGG 39511 ||||| |||||||||||| |||| || ||||||| |||||| | | |||| || || Sbjct 2081 CCCGGGCGGTACAGCGCGCCGACCGCGGAGATGTGCTCGAACTCGCTGGGCGCCATGCGG 2022 Query 39512 CGGAGCAGGGAGCGCATCGCACCGCCGTCGAGCTGGAACACCGAGAGCGTGTCACCCTTG 39571 || ||||| ||||||| |||||||||||||||||||| || ||||| || | Sbjct 2021 CGCAGCAGATCCCGCATCGGGCCGCCGTCGAGCTGGAACACACCCAGGGTGTCCCCGCGG 1962 Query 39572 GCCAGCAGCTCGTAGGTCGGGGCGTCGTCCAGCGGGATGTTCTCCAGGTCGA---CGTGC 39628 | ||||||||||||||| |||||| ||| || | |||||||||| || || Sbjct 1961 GAGAGCAGCTCGTAGGTCTTCCGGTCGTCGAGCTCGACCTCGTCCAGGTCGACGGCGGGC 1902 Query 39629 TCCCCACGGTTACGACGGATGTTCTCGACGGCGTCGCCCATGATCGTGAGGTTCCGCAGG 39688 | || ||| | ||||||||| | ||||||| | | ||| |||||||| ||||| Sbjct 1901 TTGCC---GTTGAGCTCGATGTTCTCCAGGGCGTCGTCGAGGATGGTGAGGTTGCGCAGC 1845 Query 39689 CCGAGGAAGTCCATCTTGACCGCGCCCATGCTCTCGCACTGGGGGTAGTCCCACTGCGTG 39748 || |||||||||||||| | | ||| ||| ||||||| | ||| |||||||| Sbjct 1844 CCCAGGAAGTCCATCTTCAGCAGGCCGATGGTCTCGCAGACGCCCATGTCGAACTGCGTG 1785 Query 39749 ACGGTGACGCCGTCCGCAGGACGGACCCACACCGGAAGGTGATCGACCAGGGGC-TCGTT 39807 | | | ||||||| | ||| | | ||| | |||| || ||| ||| Sbjct 1784 ATGATCGCGCCGTCGGACTCGCGGCGCTGGATCGGGATCACGTCGATCAACGGCGTCG-A 1726 Query 39808 GGACATGATCACACCGGCCGCGTGCACGCCCATCTGGCGAACCAGACCTTCGAGCCCGAG 39867 |||||||||||| || || |||||||| ||| ||| || ||| || ||||| || | Sbjct 1725 GGACATGATCACGCCCGCGGCGTGCACACCCCACTGCCGCTTCAGTCCCTCGAGGCCCCG 1666 Query 39868 CGCAGTGTCGATCACCTCCTTCGAGTCCTTGTCGTTCTCGTACAGGCCCCGGATCTCGCC 39927 ||| ||||||| | |||||| | | ||| |||||| ||| | |||| |||| Sbjct 1665 CGCGGTGTCGACGATCTCCTTGACCTGCGGGTCCGCCTCGTAGAGGGCGCGGACCTCGGT 1606 Query 39928 CGCCTCGTCGTAGCGCGGGTGCTCCGGGTTGAAGATCCCCTCCAGGGGCATCGACGCGCC 39987 ||||||| ||| ||| |||| ||||| |||||| ||| ||| || || | ||| Sbjct 1605 CGCCTCGGAGTACCGCTTGTGCGACGGGTCGAAGATGCCCGACAGCGGGATGTCCTTGCC 1546 Query 39988 CATCACATCGGCCGGGTACGCCTTGGTCAGCTTC--TCGCCGAC---CTGGAAGGGCTTG 40042 |||||| ||| ||| ||||||| || | | ||| |||| | | ||||| | Sbjct 1545 CATCACCGCGGGCGGCATGGCCTTGG--AGATGCGGTCGGCGACGGAGTAGCCGGGCTGG 1488 Query 40043 TC---CAGCACGCGGGCCGCGTCCTTCATCGCGTTGCGCGCCTTGATCCGGCCGA--AGG 40097 | |||||| || |||| |||||| |||||| |||||||||| | ||| ||| Sbjct 1487 CCGAACAGCACCCGCGCCGAGTCCTTGATCGCGGCCTTCGCCTTGATC--GTCGAGTAGG 1430 Query 40098 TCCCGATCTGTGCGACCTTGTCGGCCCCGTACTTCTCGGTGACGTACCGGATGACCTCGC 40157 | |||||| |||| | ||| | |||||||||||||||||||| ||||| | ||||| Sbjct 1429 TGATGATCTGCGCGATCCGGTCCTCGCCGTACTTCTCGGTGACGTAGCGGATCATCTCGC 1370 Query 40158 CGCGACGCCGGTCATCGAAGTCGATGTCAACGTCGGGCATGGACACGCGCTCGGGGTTCA 40217 |||| ||||| || |||||||| ||||| | ||||||||| ||||| || || ||||||| Sbjct 1369 CGCGCCGCCGCTCGTCGAAGTCCATGTCGATGTCGGGCATCGACACACGGTCCGGGTTCA 1310 Query 40218 GGAACCGCTCGAAGATGAGCCCGTGCTCCAGTGGATCGAGGTCGGTGATCCCGAGGCAGT 40277 |||||||||||||||| ||| |||| | || |||||||||||||| || ||| || Sbjct 1309 GGAACCGCTCGAAGATCAGCTTGTGCCGGATCGGGTCGAGGTCGGTGATGCCCAGGACGT 1250 Query 40278 AGGCGACCAGCGAACCGGCTGCCGAGCCTCGCCCAGGACCGACCCACACGCCGTTCTCCT 40337 ||||||||||||| || || |||||||| || || || ||| | | |||| | || Sbjct 1249 AGGCGACCAGCGAGCCCGCCGCCGAGCCACGGCCGGGGCCGCAGCGGATGCCGACCGACT 1190 Query 40338 TGGCCCAGCCGATGAAGTCGGCGACGACCAGGAAGTAGGACGGGAAGCCCATCTGGATGA 40397 |||| ||||| ||| ||| |||||||||||| ||| ||||||||| ||||| Sbjct 1189 TGGCGTGCTGGATGAGGTCCGCGGTCACCAGGAAGTAGCCGGGGTAGCCCATCTTGATGA 1130 Query 40398 TCATGTCGATCTCGTACTGGAGCTGCTTGCCG----TGCTCGTAGTCGGTCCCGTTCGGG 40453 | | | ||| |||||| | | |||| ||||| | |||| | || |||| ||| Sbjct 1129 TGACGCCGACCTCGTAGTTGGCCTGC-TGCCGGTACTTCTCGGTGACG---CCGTCGGGG 1074 Query 40454 AACCG-TCGAGCTGCCCCACGGTGGACCTCGTCCTCGAACCAGGTCACCTCCGTGTGCCC 40512 ||||| | || | ||| || | |||||| | | ||||| | |||| || | ||| Sbjct 1073 AACCGCATGTGCAGTCCC-CGCTCGACCTCCTTGATCAGCCAGGACTCCTCGGTCTCCCC 1015 Query 40513 CTCGGGCACCGGGAAGCGAGGCATGAGGTC--GG--TGTGCTCGAACATGCCCGTCG-TG 40567 |||||| || || ||| |||||| || ||| | ||| |||| || Sbjct 1014 CTCGGGGACGGGCGCCTTGGGCTGGAGGTCCTGGCCGGTGGT-GAA-------GTCGATG 963 Query 40568 TCGACACGCTCGGCGATCTCCAGCGTGGT-CCGCATCCCCCACTCCCAGATGGGAGAGGA 40626 | | |||||||||| ||||||| | |||| || | ||| || | Sbjct 962 TTGCAGCGCTCGGCGACGAGCAGCGTGTTGTCGCAGGCCTC-GGGGTGGATCGGGTCCCA 904 Query 40627 GTCGATGGCCGCCATCTCGGCGGCCGTCTTGATGTAGTA-CCCGGAGCCCTCGAACCGGA 40685 | | |||| |||||||||||| | ||||| |||| | || | | | |||||| || Sbjct 903 G-AGCTGGC--GCATCTCGGCGGCGGACTTGAGGTAGAAGTCCTGCG-CGTCGAACTTGA 848 Query 40686 AGCGGTTCGGGTTGTCGAGCGTGGTGCCGGTCTGGACGCAGAGTAGGGCATCGTGCGCCT 40745 | |||||||||| |||| || |||||||||||||||| || || | |||||||||| Sbjct 847 ACCGGTTCGGGTCCGCGAGGGTCTTGCCGGTCTGGACGCACAGGAGCACCTCGTGCGCCT 788 Query 40746 TGCTCTCGTCGGCCGTGACGTAGTGGCTGTCGTTGGTGACCA--CCGGGGTGAGCGCGAG 40803 || | ||||| | | |||||| |||||| || | | ||||| || |||| Sbjct 787 TGGTGTCGTCCGGGTAGGTGTAGTGCAGGTCGTTCGTCGCGAGGCCGGG--CAGGTCGAG 730 Query 40804 ---GTGCTTGCCCAGCCGGTAGAGGTCGTCGCGGACGCGCCGCTCGATCTCCAGGCCGTG 40860 || |||| |||||| | ||||| || |||| ||| ||||||||| | |||||| Sbjct 729 CTTGTCCTTG---AGCCGGAACAGGTCCTCCTGGACCCGCTTCTCGATCTCGATGCCGTG 673 Query 40861 GTCCATGATCTCCAGGAAGTACCGGTCACGACCGAACACCTCCAGGTACCGGCCAGCCTC 40920 |||||| | |||||||||| | ||| ||||| | || |||| || || | Sbjct 672 GTCCATCAGCTCCAGGAAGAAGTTGTCCTTCCCGAAGATGTCGCGGTAGTCGCTCGCGGC 613 Query 40921 C--GCAACGGCCTGGTCGTACTGCCCGAGGTTGAGCCGGGTCATGATCGCACCGCCAGGG 40978 | ||| |||| |||| | | | | |||| || | || | | ||| ||| Sbjct 612 CTGGCA--GGCCGCGTCGAAGTCGTGCTGCTGGAGCAGGCGCGCGACCTCGCCGGACGGG 555 Query 40979 CAGCCCGTGGTGACGATCAGGCCCTCGTTGTGCTCGGCGACGAGGTCGAAGTCCATGCGC 41038 |||||||| || |||||||||||| | || || | | || ||| |||||| ||| Sbjct 554 CAGCCCGTCGTCGCGATCAGGCCCTTGCCGTACTTCTCCAGCAGCTCGCGGTCCATACGC 495 Query 41039 GGGTACTTCCCG-AGCAGGCCCTCTTGGTACGACCGAGAGCTGAGCTTCATGAGGTTGTG 41097 || ||| | || | |||||| || | | | ||| |||| | ||||||||| Sbjct 494 GG---CTTGTAGTAGTA-GCCCTCGAGGCTGGCCAGCGAGGAGAGCCGGAAGAGGTTGTG 439 Query 41098 CAGGCCGGTCTTGTTCTCGGCGAGGATCGTGAGGTGGGTGTACGCACCGCGACCGCTCAC 41157 || || | ||||||| ||||| | ||| | |||||||||| | | Sbjct 438 CATCCCCTCCGTGTTCTCCGCGAGCAGCGTCATGTGGGTGTAC------------ATGAG 391 Query 41158 GTCGTAACGCTTCTGGTCCTCGGTGCCCCACTGCACCCGCTCCTGATCGAAGCGCGAGCC 41217 |||| |||| | || ||||| | |||| | ||| ||||| || Sbjct 390 GTCGGGGTTGTTCTCGCTGCCGTTGCCCAGCGCGGTGCGCTTGCGCTCGTGCCGCGACCC 331 Query 41218 CGGAGCCATGTACGCCTCGATGCCGATGATCGGCTTGACCCCAGCGGCCGTAGCTGTGGT 41277 || || | ||| |||| |||||||||||||||||||| | ||| | || || Sbjct 330 GGGCGCGAGGTAGCCCTCCATGCCGATGATCGGCTTGACGTCGTGCGCCTTCGCCTTGCG 271 Query 41278 GAAGAAGTCGTGCGCACCGTGCAGGTTGCCGTGGTCGGTGACGGCGACTGCCGGGGAGCC 41337 |||| ||| || |||| | ||||||||||||||| | |||| ||||| | Sbjct 270 CCAGAACTCGAAGGCGCCGTAGACGTTGCCGTGGTCGGTCATCGCGATGGCCGGCATCTC 211 Query 41338 CTGGCGGGCGACCTCGGCGACCATCTGCTTCATCCGAGCGGCCCCGTCGAGGAGGCTGTA 41397 || |||| |||||| || || | | | ||| ||||| ||||| || | | | Sbjct 210 GTGCTTGGCGGCCTCGGAGAACAGGTCGTCGAGCCGGGCGGCACCGTCCAGCATCGAGAA 151 Query 41398 CTCGGAGTGGTTGTGGAGGTGAACGAA 41424 ||||| ||| |||| || |||||||| Sbjct 150 CTCGGTGTGCGTGTGCAGATGAACGAA 124 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 160398519734838